4L5L Crystal structure of 26 kDa GST of Clonorchis sinensis in P212121 symmetry date
authors Chung, Y.J., Han, Y.H.
compound source
symmetry
R_factor
R_Free 0.23650
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.20
ligand GSH, MES, ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceCrystal structures of 26kDa Clonorchis sinensis glutathione S-transferase reveal zinc binding and putative metal binding., Han YH, Hong SJ, Cheong HK, Chung YJ, Biochem Biophys Res Commun. 2013 Aug 23;438(2):457-61. doi:, 10.1016/j.bbrc.2013.07.102. Epub 2013 Jul 31. PMID:23916611
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (80 Kb) [Save to disk]
  • Biological Unit Coordinates (4l5l.pdb1.gz) 74 Kb
  • LPC: Ligand-Protein Contacts for 4L5L
  • CSU: Contacts of Structural Units for 4L5L
  • Structure Factors (303 Kb)
  • Retrieve 4L5L in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4L5L from S2C, [Save to disk]
  • Re-refined 4l5l structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4L5L in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4L5L
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4L5L, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4l5l_A] [4l5l] [4l5l_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4L5L
  • Community annotation for 4L5L at PDBWiki (http://pdbwiki.org)

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