4M5X Crystal structure of the USP7/HAUSP catalytic domain date
authors Mesecar, A.D., Molland, K.L., Zhou, Q.
compound source
symmetry
R_factor
R_Free 0.2214
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.19
ligand BR enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceA 2.2 A resolution structure of the USP7 catalytic domain in a new space group elaborates upon structural rearrangements resulting from ubiquitin binding., Molland K, Zhou Q, Mesecar AD, Acta Crystallogr F Struct Biol Commun. 2014 Mar;70(Pt 3):283-7. doi:, 10.1107/S2053230X14002519. Epub 2014 Feb 19. PMID:24598911
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (236 Kb) [Save to disk]
  • Biological Unit Coordinates (4m5x.pdb1.gz) 117 Kb
  • Biological Unit Coordinates (4m5x.pdb2.gz) 116 Kb
  • LPC: Ligand-Protein Contacts for 4M5X
  • CSU: Contacts of Structural Units for 4M5X
  • Structure Factors (895 Kb)
  • Retrieve 4M5X in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4M5X from S2C, [Save to disk]
  • Re-refined 4m5x structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4M5X in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4M5X
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4M5X, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4m5x_A] [4m5x_B] [4m5x]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4M5X
  • Community annotation for 4M5X at PDBWiki (http://pdbwiki.org)

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