4MEI Crystal structure of a VirB8 Type IV secretion system machinery soluble domain from Bartonella tribocorum date 2013-08-26
authors SSGCID, Seattle.Structural.Genomics.Center.for.Infectious.Disease.
compound source
symmetry
R_factor
R_Free 0.2467
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.85
Gene BT
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructural Insight into How Bacteria Prevent Interference between Multiple Divergent Type IV Secretion Systems., Gillespie JJ, Phan IQ, Scheib H, Subramanian S, Edwards TE, Lehman SS, Piitulainen H, Sayeedur Rahman M, Rennoll-Bankert KE, Staker BL, Taira S, Stacy R, Myler PJ, Azad AF, Pulliainen AT, MBio. 2015 Dec 8;6(6). pii: e01867-15. doi: 10.1128/mBio.01867-15. PMID:26646013
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (51 Kb) [Save to disk]
  • Biological Unit Coordinates (4mei.pdb1.gz) 90 Kb
  • CSU: Contacts of Structural Units for 4MEI
  • Structure Factors (88 Kb)
  • Retrieve 4MEI in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4MEI from S2C, [Save to disk]
  • Re-refined 4mei structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4MEI in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4MEI
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4MEI, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4mei] [4mei_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4MEI
  • Community annotation for 4MEI at PDBWiki (http://pdbwiki.org)

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