4MJI T cell response to a HIV reverse transcriptase epitope presented by the protective allele HLA-B*51:01 date
authors Rizkallah, P.J., Cole, D.K., Sewell, A.K., Motozono, C., Takiguchi, M.
compound source
symmetry
R_factor
R_Free 0.3038
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.99
Gene
Ontology
ChainFunctionProcessComponent
G, B
  • cellular response to iron io...

    • Primary referenceMolecular basis of a dominant T cell response to an HIV reverse transcriptase 8-mer epitope presented by the protective allele HLA-B*51:01., Motozono C, Kuse N, Sun X, Rizkallah PJ, Fuller A, Oka S, Cole DK, Sewell AK, Takiguchi M, J Immunol. 2014 Apr 1;192(7):3428-34. doi: 10.4049/jimmunol.1302667. Epub 2014, Mar 5. PMID:24600035
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (564 Kb) [Save to disk]
  • Biological Unit Coordinates (4mji.pdb1.gz) 280 Kb
  • Biological Unit Coordinates (4mji.pdb2.gz) 280 Kb
  • CSU: Contacts of Structural Units for 4MJI
  • Structure Factors (1655 Kb)
  • Retrieve 4MJI in mmCIF format [Save to disk]
  • Re-refined 4mji structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4MJI in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4MJI
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4MJI, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4mji_C] [4mji_I] [4mji] [4mji_H] [4mji_G] [4mji_B] [4mji_D] [4mji_F] [4mji_J] [4mji_A] [4mji_E]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4MJI: [IG_like] [IGc1] [IGv ] by SMART
    • Other resources with information on 4MJI
  • Community annotation for 4MJI at PDBWiki (http://pdbwiki.org)

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