4NWM Crystal structure of Bruton agammaglobulinemia tyrosine kinase complexed with BMS-809959 aka 4-tert-butyl-n-[2-me thyl-3-(6-{[4-(morpholine-4-carbonyl)phenyl]amino}-9h- purin-2-yl)phenyl]benzamide date
authors Muckelbauer, J.K.
compound source
symmetry
R_factor
R_Free 0.2345
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.03
ligand 2P5, OCS enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referencePurine derivatives as potent Bruton's tyrosine kinase (BTK) inhibitors for autoimmune diseases., Shi Q, Tebben A, Dyckman AJ, Li H, Liu C, Lin J, Spergel S, Burke JR, McIntyre KW, Olini GC, Strnad J, Surti N, Muckelbauer JK, Chang C, An Y, Cheng L, Ruan Q, Leftheris K, Carter PH, Tino J, De Lucca GV, Bioorg Med Chem Lett. 2014 May 1;24(9):2206-11. doi: 10.1016/j.bmcl.2014.02.075. , Epub 2014 Mar 13. PMID:24685542
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (93 Kb) [Save to disk]
  • Biological Unit Coordinates (4nwm.pdb1.gz) 45 Kb
  • Biological Unit Coordinates (4nwm.pdb2.gz) 45 Kb
  • LPC: Ligand-Protein Contacts for 4NWM
  • CSU: Contacts of Structural Units for 4NWM
  • Structure Factors (261 Kb)
  • Retrieve 4NWM in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4NWM from S2C, [Save to disk]
  • Re-refined 4nwm structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4NWM in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4NWM
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4NWM, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4nwm_B] [4nwm] [4nwm_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4NWM: [TyrKc ] by SMART
  • Other resources with information on 4NWM
  • Community annotation for 4NWM at PDBWiki (http://pdbwiki.org)

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