4PXM The Estrogen Receptor Alpha Ligand Binding Domain D538G Mutant in Complex with Estradiol and a glucocorticoid receptor-interacting protein 1 NR box II peptide date
authors Fanning, S.W., Panchamukhi, S., Greene, G.L.
compound source
symmetry
R_factor
R_Free 0.21417
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.90
ligand EST enzyme
Primary referenceEstrogen receptor alpha somatic mutations Y537S and D538G confer breast cancer endocrine resistance by stabilizing the activating function-2 binding conformation., Fanning SW, Mayne CG, Dharmarajan V, Carlson KE, Martin TA, Novick SJ, Toy W, Green B, Panchamukhi S, Katzenellenbogen BS, Tajkhorshid E, Griffin PR, Shen Y, Chandarlapaty S, Katzenellenbogen JA, Greene GL, Elife. 2016 Feb 2;5. pii: e12792. doi: 10.7554/eLife.12792. PMID:26836308
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (160 Kb) [Save to disk]
  • Biological Unit Coordinates (4pxm.pdb1.gz) 154 Kb
  • LPC: Ligand-Protein Contacts for 4PXM
  • CSU: Contacts of Structural Units for 4PXM
  • Structure Factors (760 Kb)
  • Retrieve 4PXM in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4PXM from S2C, [Save to disk]
  • Re-refined 4pxm structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4PXM in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4PXM
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4PXM, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4pxm_A] [4pxm] [4pxm_B] [4pxm_C] [4pxm_D]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4PXM: [HOLI ] by SMART
    • Other resources with information on 4PXM
  • Community annotation for 4PXM at PDBWiki (http://pdbwiki.org)

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