4RN1	Crystal structure of S39D HDAC8 in complex with a largazole analogue.	date
authors	Decroos, C., Christianson, D.W.
compound		source
symmetry		R_factor R_Free 0.2125
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution	2.18
ligand	GOL, IMD, K, L8G, ZN	enzyme
Gene Ontology	Chain Function Process Component A, B
Primary reference	Variable Active Site Loop Conformations Accommodate the Binding of Macrocyclic Largazole Analogues to HDAC8., Decroos C, Clausen DJ, Haines BE, Wiest O, Williams RM, Christianson DW, Biochemistry. 2015 Mar 31;54(12):2126-35. doi: 10.1021/acs.biochem.5b00010. Epub , 2015 Mar 20. PMID:25793284

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (126 Kb) [Save to disk] Biological Unit Coordinates (4rn1.pdb1.gz) 63 Kb Biological Unit Coordinates (4rn1.pdb2.gz) 61 Kb LPC: Ligand-Protein Contacts for 4RN1 CSU: Contacts of Structural Units for 4RN1 Structure Factors (692 Kb) Retrieve 4RN1 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 4RN1 from S2C, [Save to disk] Re-refined 4rn1 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 4RN1 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 4RN1

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 4RN1, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [4rn1] [4rn1_A] [4rn1_B] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 4RN1

Community annotation for 4RN1 at PDBWiki (http://pdbwiki.org)

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