4RQZ re-refinement of 1soz, Crystal Structure of DegS protease in complex with an activating peptide date
authors Sauer, R.T., Grant, R.A.
compound source
symmetry
R_factor
R_Free 0.2264
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.40
Gene P12B
Gene
Ontology
ChainFunctionProcessComponent
A, C, B


Primary referenceA Conserved Activation Cluster Is Required for Allosteric Communication in HtrA-Family Proteases., de Regt AK, Kim S, Sohn J, Grant RA, Baker TA, Sauer RT, Structure. 2015 Mar 3;23(3):517-26. doi: 10.1016/j.str.2015.01.012. Epub 2015 Feb, 19. PMID:25703375
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (241 Kb) [Save to disk]
  • Biological Unit Coordinates (4rqz.pdb1.gz) 236 Kb
  • CSU: Contacts of Structural Units for 4RQZ
  • Structure Factors (376 Kb)
  • Retrieve 4RQZ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4RQZ from S2C, [Save to disk]
  • Re-refined 4rqz structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4RQZ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4RQZ
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4RQZ, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4rqz_D] [4rqz_C] [4rqz_F] [4rqz] [4rqz_A] [4rqz_E] [4rqz_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4RQZ: [PDZ ] by SMART
    • Other resources with information on 4RQZ
  • Community annotation for 4RQZ at PDBWiki (http://pdbwiki.org)

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