4Z07 Co-crystal structure of the tandem CNB (CNB-A/B) domains of human PKG I beta with cGMP date
authors Kim, J.J., Reger, A.S., Arold, S.T., Kim, C.
compound source
symmetry
R_factor
R_Free 0.2237
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.50
ligand IPA, PCG, SO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, C, E


Primary referenceCrystal Structure of PKG I:cGMP Complex Reveals a cGMP-Mediated Dimeric Interface that Facilitates cGMP-Induced Activation., Kim JJ, Lorenz R, Arold ST, Reger AS, Sankaran B, Casteel DE, Herberg FW, Kim C, Structure. 2016 May 3;24(5):710-720. doi: 10.1016/j.str.2016.03.009. Epub 2016, Apr 7. PMID:27066748
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (225 Kb) [Save to disk]
  • Biological Unit Coordinates (4z07.pdb1.gz) 175 Kb
  • Biological Unit Coordinates (4z07.pdb2.gz) 46 Kb
  • LPC: Ligand-Protein Contacts for 4Z07
  • CSU: Contacts of Structural Units for 4Z07
  • Structure Factors (517 Kb)
  • Retrieve 4Z07 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4Z07 from S2C, [Save to disk]
  • Re-refined 4z07 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4Z07 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4Z07
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4z07_A] [4z07] [4z07_C] [4z07_E]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4Z07: [cNMP ] by SMART
  • Other resources with information on 4Z07
  • Community annotation for 4Z07 at PDBWiki (http://pdbwiki.org)

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