4Z8L	Crystal structure of DCAF1/SIV-MND VPX/MND SAMHD1 NTD ternary complex	date
authors	Koharudin, L.M., Wu, Y., Calero, G., Ahn, J., Gronenborn, A.M.
compound		source
symmetry		R_factor R_Free 0.2277
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution	2.60
ligand	ZN	enzyme
Gene Ontology	Chain Function Process Component A, D E, B
Primary reference	Structural basis of clade-specific engagement of SAMHD1 restriction factors by lentiviral Vpx virulence factors., Wu Y, Koharudin LM, Mehrens J, DeLucia M, Byeon CH, Byeon IJ, Calero G, Ahn J, Gronenborn AM, J Biol Chem. 2015 Jun 4. pii: jbc.M115.665513. PMID:26045556

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (164 Kb) [Save to disk] Biological Unit Coordinates (4z8l.pdb1.gz) 80 Kb Biological Unit Coordinates (4z8l.pdb2.gz) 81 Kb LPC: Ligand-Protein Contacts for 4Z8L CSU: Contacts of Structural Units for 4Z8L Structure Factors (540 Kb) Retrieve 4Z8L in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 4Z8L from S2C, [Save to disk] Re-refined 4z8l structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 4Z8L in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 4Z8L

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 4Z8L, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [4z8l_E] [4z8l_D] [4z8l_C] [4z8l_F] [4z8l_B] [4z8l_A] [4z8l] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 4Z8L: [SAM ] by SMART

Other resources with information on 4Z8L

Community annotation for 4Z8L at PDBWiki (http://pdbwiki.org)

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---