4ZTM Irak4-inhibitor co-structure date
authors Fischmann, T.O.
compound source
symmetry
R_factor
R_Free 0.2259
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.66
ligand 4S2, SEP, TPO enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceDiscovery and Structure Enabled Synthesis of 2,6-Diaminopyrimidin-4-one IRAK4 Inhibitors., Seganish WM, Fischmann TO, Sherborne B, Matasi J, Lavey B, McElroy WT, Tulshian D, Tata J, Sondey C, Garlisi CG, Devito K, Fossetta J, Lundell D, Niu X, ACS Med Chem Lett. 2015 Jul 12;6(8):942-7. doi: 10.1021/acsmedchemlett.5b00279., eCollection 2015 Aug 13. PMID:26288698
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (191 Kb) [Save to disk]
  • Biological Unit Coordinates (4ztm.pdb1.gz) 49 Kb
  • Biological Unit Coordinates (4ztm.pdb2.gz) 49 Kb
  • Biological Unit Coordinates (4ztm.pdb3.gz) 49 Kb
  • Biological Unit Coordinates (4ztm.pdb4.gz) 49 Kb
  • LPC: Ligand-Protein Contacts for 4ZTM
  • CSU: Contacts of Structural Units for 4ZTM
  • Structure Factors (392 Kb)
  • Retrieve 4ZTM in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4ZTM from S2C, [Save to disk]
  • Re-refined 4ztm structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4ZTM in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4ZTM
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4ztm_D] [4ztm_A] [4ztm_B] [4ztm_C] [4ztm]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4ZTM: [STYKc ] by SMART
    • Other resources with information on 4ZTM
  • Community annotation for 4ZTM at PDBWiki (http://pdbwiki.org)

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