5ABB Visualization of a polytopic membrane protein during SecY-mediated membrane insertion date
authors Bischoff, L., Wickles, S., Berninghausen, O., vanderSluis, E., Beckmann, R.
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 8.00
Gene
Ontology
ChainFunctionProcessComponent
A


B


Z


Primary referenceVisualization of a polytopic membrane protein during SecY-mediated membrane insertion., Bischoff L, Wickles S, Berninghausen O, van der Sluis EO, Beckmann R, Nat Commun. 2014 Jun 10;5:4103. doi: 10.1038/ncomms5103. PMID:24912953
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (54 Kb) [Save to disk]
  • Biological Unit Coordinates (5abb.pdb1.gz) 47 Kb
  • CSU: Contacts of Structural Units for 5ABB
  • Retrieve 5ABB in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5ABB from S2C, [Save to disk]
  • View 5ABB in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5ABB
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5abb_Z] [5abb_B] [5abb_A] [5abb]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5ABB
  • Community annotation for 5ABB at PDBWiki (http://pdbwiki.org)

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