5ANL Transferase date Sep 07, 2015
title Crystal Structure Of Vps34 In Complex With (2s)-8-((3r)-3- Methylmorpholin-4-Yl)-1-(3-Methyl-2-Oxo- Butyl)-2-( Trifluoromethyl)-3,4-Dihydro-2h-Pyrimido(1,2-A)Pyrimidin-6- One, Processed With The Crystaldirect Automated Mounting And Cryo-Cooling Technology
authors U.Zander, G.Hoffmann, M.Mathieu, J.P.Marquette, I.Cornaciu, F.Ci J.A.Marquez
compound source
Molecule: Phosphatidylinositol 3-Kinase Catalytic Subunit T
Chain: A
Fragment: Vps34 Helical And Kinase Domains, Unp Residues 28
Synonym: Pi3-Kinase Type 3, Pi3k Type 3, Ptdins-3-Kinase Ty Phosphatidylinositol 3-Kinase P100 Subunit, Phosphoinositi Kinase Class 3, Hvps34;
Ec: 2.7.1.137
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 2
R_factor 0.20534 R_Free 0.26667
crystal
cell
length a length b length c angle alpha angle beta angle gamma
88.215 145.763 61.474 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.70 Å
ligand RBQ enzyme Transferase E.C.2.7.1.137 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (96 Kb) [Save to disk]
  • Biological Unit Coordinates (5anl.pdb1.gz) 91 Kb
  • LPC: Ligand-Protein Contacts for 5ANL
  • CSU: Contacts of Structural Units for 5ANL
  • Structure Factors (428 Kb)
  • Retrieve 5ANL in mmCIF format [Save to disk]
  • Re-refined 5anl structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5ANL in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5ANL
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5anl] [5anl_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 5ANL: [PI3Ka] [PI3Kc ] by SMART
  • Other resources with information on 5ANL
  • Community annotation for 5ANL at PDBWiki (http://pdbwiki.org)

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