5BPO Hormone date May 28, 2015
title Human Insulin With Intra-Chain Chemical Crosslink Between Mo And B29
authors A.M.Brzozowski, J.P.Turkenburg, J.Jiracek, L.Zakova
compound source
Molecule: Insulin
Chain: A, C
Engineered: Yes
 Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Other_details: Sequence Occurs Naturally

Molecule: Insulin
Chain: B, D
Engineered: Yes
Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
symmetry Space Group: C 1 2 1
R_factor 0.235 R_Free 0.304
crystal
cell
length a length b length c angle alpha angle beta angle gamma
66.103 45.968 43.929 90.00 128.50 90.00
method X-Ray Diffractionresolution 1.90 Å
ligand HIX, NVA enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, C


D, B


Primary referenceRational steering of insulin binding specificity by intra-chain chemical crosslinking., Vikova J, Collinsova M, Kletvikova E, Budesinsky M, Kaplan V, Zakova L, Veverka V, Hexnerova R, Avino RJ, Strakova J, Selicharova I, Vanek V, Wright DW, Watson CJ, Turkenburg JP, Brzozowski AM, Jiracek J, Sci Rep. 2016 Jan 21;6:19431. doi: 10.1038/srep19431. PMID:26792393
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (24 Kb) [Save to disk]
  • Biological Unit Coordinates (5bpo.pdb1.gz) 19 Kb
  • LPC: Ligand-Protein Contacts for 5BPO
  • CSU: Contacts of Structural Units for 5BPO
  • Structure Factors (433 Kb)
  • Retrieve 5BPO in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5BPO from S2C, [Save to disk]
  • Re-refined 5bpo structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5BPO in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5BPO
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5bpo_D] [5bpo_B] [5bpo_C] [5bpo] [5bpo_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 5BPO: [IlGF ] by SMART
    • Other resources with information on 5BPO
  • Community annotation for 5BPO at PDBWiki (http://pdbwiki.org)

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