5BSK Transferase Transferase Inhibitor date Jun 02, 2015
title Human Hgprt In Complex With (S)-Hpepg, An Acyclic Nucleoside Phosphonate
authors D.T.Keough, L.W.Guddat, M.M.Kaiser, D.Hockova, T.H.Wang, Z.Janeb
compound source
Molecule: Hypoxanthine-Guanine Phosphoribosyltransferase
Chain: A, B, C, D
Synonym: Hgprtase
Ec: 2.4.2.8
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Hprt1, Hprt
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 21
R_factor 0.206 R_Free 0.268
crystal
cell
length a length b length c angle alpha angle beta angle gamma
74.272 93.279 129.881 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.61 Å
ligand 4X7, MG enzyme Transferase E.C.2.4.2.8 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceSynthesis and Evaluation of Novel Acyclic Nucleoside Phosphonates as Inhibitors of Plasmodium falciparum and Human 6-Oxopurine Phosphoribosyltransferases., Kaiser MM, Hockova D, Wang TH, Dracinsky M, Postova-Slavetinska L, Prochazkova E, Edstein MD, Chavchich M, Keough DT, Guddat LW, Janeba Z, ChemMedChem. 2015 Oct;10(10):1707-23. doi: 10.1002/cmdc.201500322. Epub 2015 Aug , 25. PMID:26368337
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (259 Kb) [Save to disk]
  • Biological Unit Coordinates (5bsk.pdb1.gz) 250 Kb
  • LPC: Ligand-Protein Contacts for 5BSK
  • CSU: Contacts of Structural Units for 5BSK
  • Structure Factors (490 Kb)
  • Retrieve 5BSK in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5BSK from S2C, [Save to disk]
  • Re-refined 5bsk structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5BSK in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5BSK
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5bsk] [5bsk_B] [5bsk_A] [5bsk_D] [5bsk_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5BSK
  • Community annotation for 5BSK at PDBWiki (http://pdbwiki.org)

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