5C78 Hydrolase date Jun 24, 2015
title Atp-Driven Lipid-Linked Oligosaccharide Flippase Pglk In Apo State (1)
authors C.Perez, K.P.Locher
compound source
Molecule: Atp-Driven Flippase Pglk
Chain: A, B, C, D
Engineered: Yes
 Organism_scientific: Campylobacter Jejuni
Organism_taxid: 197
Gene: Wlab
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_vector_type: Plasmid
symmetry Space Group: P 1
R_factor 0.232 R_Free 0.267
crystal
cell
length a length b length c angle alpha angle beta angle gamma
96.600 114.420 145.590 68.44 73.27 68.67
method X-Ray Diffractionresolution 2.90 Å
ligand 1PE enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceStructure and mechanism of an active lipid-linked oligosaccharide flippase., Perez C, Gerber S, Boilevin J, Bucher M, Darbre T, Aebi M, Reymond JL, Locher KP, Nature. 2015 Aug 12. doi: 10.1038/nature14953. PMID:26266984
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (793 Kb) [Save to disk]
  • Biological Unit Coordinates (5c78.pdb1.gz) 394 Kb
  • Biological Unit Coordinates (5c78.pdb2.gz) 394 Kb
  • LPC: Ligand-Protein Contacts for 5C78
  • CSU: Contacts of Structural Units for 5C78
  • Structure Factors (1079 Kb)
  • Retrieve 5C78 in mmCIF format [Save to disk]
  • Re-refined 5c78 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5C78 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5C78
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5c78_A] [5c78_D] [5c78] [5c78_B] [5c78_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 5C78: [AAA ] by SMART
    • Other resources with information on 5C78
  • Community annotation for 5C78 at PDBWiki (http://pdbwiki.org)

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