5EZF Dna date Nov 26, 2015
title Racemic Crystal Structures Of Pribnow Box Consensus Promoter (Pbca)
authors P.K.Mandal, G.W.Collie, B.Kauffmann, S.C.Srivastava, I.Huc
compound source
Molecule: Pribnow Box Template Strand
Chain: A
Engineered: Yes
 Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630

Molecule: Complementary Strand
Chain: B
Engineered: Yes
Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630
symmetry Space Group: P b c a
R_factor 0.296 R_Free 0.317
crystal
cell
length a length b length c angle alpha angle beta angle gamma
41.736 39.329 65.713 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.65 Å
ligand CA enzyme
Primary referenceStructure elucidation of the Pribnow box consensus promoter sequence by racemic DNA crystallography., Mandal PK, Collie GW, Srivastava SC, Kauffmann B, Huc I, Nucleic Acids Res. 2016 May 2. pii: gkw367. PMID:27137886
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (27 Kb) [Save to disk]
  • Biological Unit Coordinates (5ezf.pdb1.gz) 22 Kb
  • LPC: Ligand-Protein Contacts for 5EZF
  • CSU: Contacts of Structural Units for 5EZF
  • Structure Factors (234 Kb)
  • Retrieve 5EZF in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5EZF from S2C, [Save to disk]
  • Re-refined 5ezf structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5EZF in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5EZF
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5ezf_B] [5ezf] [5ezf_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5EZF
  • Community annotation for 5EZF at PDBWiki (http://pdbwiki.org)

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science