5F5B	Hydrolase Hydrolase Inhibitor	date	Dec 04, 2015
title	Structure Of E.Coli Glpg Complexed With Peptidic Inhibitor A
authors	S.Urban, S.Cho, S.W.Dickey
compound		source
Molecule: Rhomboid Protease Glpg Chain: A Fragment: Unp Residues 87-276 Synonym: Intramembrane Serine Protease Ec: 3.4.21.105 Engineered: Yes		Organism_scientific: Escherichia Coli Organism_taxid: 562 Gene: Glpg, Sk83_00858 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21 (C43) Expression_system_plasmid: Pet21
Molecule: Peptidic Derivative Of Gurken: Ace-Val-Arg-Met-Al Aldehyde; Chain: B Engineered: Yes Other_details: Aldehyde Inhibitor Of Rhomboid Protease, Mod At C-Terminus By Aldehyde Group		Synthetic: Yes Organism_scientific: Drosophila Melanogaster Organism_taxid: 7227
symmetry	Space Group: H 3 2	R_factor 0.213 R_Free 0.249
crystal cell	length a length b length c angle alpha angle beta angle gamma 110.590 110.590 126.730 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	2.30 Å
ligand	5XU, ACE	enzyme	Hydrolase E.C.3.4.21.105 BRENDA
Gene	SK83
Gene Ontology	Chain Function Process Component A
Primary reference	Crystal Structures and Inhibition Kinetics Reveal a Two-Stage Catalytic Mechanism with Drug Design Implications for Rhomboid Proteolysis., Cho S, Dickey SW, Urban S, Mol Cell. 2016 Feb 4;61(3):329-40. doi: 10.1016/j.molcel.2015.12.022. Epub 2016, Jan 21. PMID:26805573

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (37 Kb) [Save to disk] Biological Unit Coordinates (5f5b.pdb1.gz) 31 Kb LPC: Ligand-Protein Contacts for 5F5B CSU: Contacts of Structural Units for 5F5B Structure Factors (1329 Kb) Retrieve 5F5B in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5F5B from S2C, [Save to disk] Re-refined 5f5b structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

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Structure-derived information

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Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5f5b_A] [5f5b] [5f5b_B] SWISS-PROT database: Domain organization of by SWISSPFAM

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