5F9E Transferase Transferase Inhibitor date Dec 09, 2015
title Structure Of Protein Kinase C Theta With Compound 10: 2,2-Di (2-Oxidanylidene-3~{H}-Imidazo[4,5-B]Pyridin-1-Yl)-1-(Pheny 3~{H}-Quinazolin-4-One
authors M.Klein
compound source
Molecule: Protein Kinase C Theta Type
Chain: A, B
Synonym: Npkc-Theta
Ec: 2.7.11.13
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Prkcq, Prkct
Expression_system: Unidentified Baculovirus
Expression_system_taxid: 10469
symmetry Space Group: P 21 21 21
R_factor 0.197 R_Free 0.233
crystal
cell
length a length b length c angle alpha angle beta angle gamma
75.603 76.786 149.304 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.00 Å
ligand 5VS, SEP enzyme Transferase E.C.2.7.11.13 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceDiscovery and optimization of 1,7-disubstituted-2,2-dimethyl-2,3-dihydroquinazolin-4(1H)-ones as potent and selective PKCtheta inhibitors., Katoh T, Takai T, Yukawa T, Tsukamoto T, Watanabe E, Mototani H, Arita T, Hayashi H, Nakagawa H, Klein MG, Zou H, Sang BC, Snell G, Nakada Y, Bioorg Med Chem. 2016 Jun 1;24(11):2466-75. doi: 10.1016/j.bmc.2016.04.008. Epub , 2016 Apr 4. PMID:27117263
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (234 Kb) [Save to disk]
  • Biological Unit Coordinates (5f9e.pdb1.gz) 123 Kb
  • Biological Unit Coordinates (5f9e.pdb2.gz) 107 Kb
  • LPC: Ligand-Protein Contacts for 5F9E
  • CSU: Contacts of Structural Units for 5F9E
  • Structure Factors (1025 Kb)
  • Retrieve 5F9E in mmCIF format [Save to disk]
  • Re-refined 5f9e structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5F9E in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5F9E
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5f9e] [5f9e_A] [5f9e_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 5F9E: [S_TK_X] [S_TKc ] by SMART
  • Other resources with information on 5F9E
  • Community annotation for 5F9E at PDBWiki (http://pdbwiki.org)

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