5H9W Hydrolase date Dec 29, 2015
title Crystal Structure Of Regnase Pin Domain, Form II
authors M.Yokogawa, T.Tsushima, W.Adachi, N.N.Noda, F.Inagaki
compound source
Molecule: Ribonuclease Zc3h12a
Chain: A, B
Fragment: Pin Domain, Unp Residues 134-339
Synonym: Regnase-1,Mcp-Induced Protein 1,Zinc Finger Ccch D Containing Protein 12a;
Ec: 3.1.-.-
Engineered: Yes
 Organism_scientific: Mus Musculus
Organism_common: Mouse
Organism_taxid: 10090
Gene: Zc3h12a, Mcpip, Mcpip1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 31 2 1
R_factor 0.191 R_Free 0.231
crystal
cell
length a length b length c angle alpha angle beta angle gamma
113.333 113.333 78.373 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.60 Å
ligand NA enzyme Hydrolase E.C.3.1 BRENDA
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (119 Kb) [Save to disk]
  • Biological Unit Coordinates (5h9w.pdb1.gz) 58 Kb
  • Biological Unit Coordinates (5h9w.pdb2.gz) 58 Kb
  • LPC: Ligand-Protein Contacts for 5H9W
  • CSU: Contacts of Structural Units for 5H9W
  • Structure Factors (306 Kb)
  • Retrieve 5H9W in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5H9W from S2C, [Save to disk]
  • Re-refined 5h9w structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5H9W in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5H9W
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5h9w_A] [5h9w_B] [5h9w]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5H9W
  • Community annotation for 5H9W at PDBWiki (http://pdbwiki.org)

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