5HZK Signaling Protein date Feb 02, 2016
title Crystal Structure Of Photoinhibitable Intersectin1 Containin Lov2 Domain In Complex With Cdc42
authors M.Tarnawski, O.Dagliyan, P.H.Chu, D.Shirvanyants, N.V.Dokholyan, I.Schlichting
compound source
Molecule: Cell Division Control Protein 42 Homolog
Chain: A, C
Synonym: G25k Gtp-Binding Protein
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Cdc42
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Intersectin-1,Nph1-1,Intersectin-1
Chain: B, D
Synonym: Sh3 Domain-Containing Protein 1a,Sh3p17,Sh3 Domain Containing Protein 1a,Sh3p17;
Engineered: Yes

Organism_scientific: Homo Sapiens, Avena Sativa
Organism_common: Human, Oat
Organism_taxid: 9606, 4498
Gene: Itsn1, Itsn, Sh3d1a, Nph1-1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 21
R_factor 0.207 R_Free 0.257
crystal
cell
length a length b length c angle alpha angle beta angle gamma
112.370 119.080 131.080 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.30 Å
ligand FMN, GDP enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, C
  • ubiquitin protein ligase act...


  • D, B


    Primary referenceEngineering extrinsic disorder to control protein activity in living cells., Dagliyan O, Tarnawski M, Chu PH, Shirvanyants D, Schlichting I, Dokholyan NV, Hahn KM, Science. 2016 Dec 16;354(6318):1441-1444. PMID:27980211
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (447 Kb) [Save to disk]
  • Biological Unit Coordinates (5hzk.pdb1.gz) 219 Kb
  • Biological Unit Coordinates (5hzk.pdb2.gz) 224 Kb
  • LPC: Ligand-Protein Contacts for 5HZK
  • CSU: Contacts of Structural Units for 5HZK
  • Structure Factors (234 Kb)
  • Retrieve 5HZK in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5HZK from S2C, [Save to disk]
  • Re-refined 5hzk structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5HZK in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5HZK
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5hzk_A] [5hzk_D] [5hzk_B] [5hzk_C] [5hzk]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5HZK
  • Community annotation for 5HZK at PDBWiki (http://pdbwiki.org)

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science