5J42	Hydrolase	date	Mar 31, 2016
title	Crystal Structure Of M2htdp2-Cat In Complex With A Small Mol Inhibitor
authors	P.Hornyak, L.H.Pearl, K.W.Caldecott, A.W.Oliver
compound		source
Molecule: Tyrosyl-Dna Phosphodiesterase 2 Chain: A, B Fragment: Unp Residues 118-370 Synonym: M2htdp2-Cat, Tyr-Dna Phosphodiesterase 2,5'-Tyrosy Phosphodiesterase,5'-Tyr-Dna Phosphodiesterase,Traf And Tnf Associated Protein; Ec: 3.1.4.- Engineered: Yes Mutation: Yes		Organism_scientific: Mus Musculus Organism_common: House Mouse Organism_taxid: 10090 Gene: Tdp2, Ttrap Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_variant: Plyss
symmetry	Space Group: P 1 21 1	R_factor 0.160 R_Free 0.197
crystal cell	length a length b length c angle alpha angle beta angle gamma 61.054 42.872 109.054 90.00 94.05 90.00
method	X-Ray Diffraction	resolution	1.70 Å
ligand	6FV, EDO, GOL, MN, TLA	enzyme	Hydrolase E.C.3.1.4 BRENDA
Primary reference	Mode of action of DNA-competitive small molecule inhibitors of tyrosyl DNA phosphodiesterase 2., Hornyak P, Askwith T, Walker S, Komulainen E, Paradowski M, Pennicott LE, Bartlett EJ, Brissett NC, Raoof A, Watson M, Jordan AM, Ogilvie DJ, Ward SE, Atack JR, Pearl LH, Caldecott KW, Oliver AW, Biochem J. 2016 Apr 20. pii: BCJ20160180. PMID:27099339

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (185 Kb) [Save to disk] Biological Unit Coordinates (5j42.pdb1.gz) 90 Kb Biological Unit Coordinates (5j42.pdb2.gz) 89 Kb LPC: Ligand-Protein Contacts for 5J42 CSU: Contacts of Structural Units for 5J42 Structure Factors (1296 Kb) Retrieve 5J42 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5J42 from S2C, [Save to disk] Re-refined 5j42 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

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Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5j42_B] [5j42_A] [5j42] SWISS-PROT database: Domain organization of by SWISSPFAM

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