5J5A	Ligase Ligase Inhibitor	date	Apr 01, 2016
title	Trypanosoma Brucei Methionyl-Trna Synthetase In Complex With (Chem 70786556)
authors	X.Barros-Alvarez, C.Y.Koh, W.G.J.Hol
compound		source
Molecule: Methionyl-Trna Synthetase, Putative Chain: A, B Ec: 6.1.1.10 Engineered: Yes Mutation: Yes		Organism_scientific: Trypanosoma Brucei Brucei Organism_taxid: 185431 Strain: 9274 Gutat10.1 Gene: Tb10.70.6470 Expression_system: Escherichia Coli Expression_system_taxid: 562
symmetry	Space Group: P 21 21 21	R_factor 0.216 R_Free 0.242
crystal cell	length a length b length c angle alpha angle beta angle gamma 87.592 105.806 207.250 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.70 Å
ligand	756, MET	enzyme	Ligase E.C.6.1.1.10 BRENDA
Gene Ontology	Chain Function Process Component A, B
Primary reference	Structure-guided design of novel Trypanosoma brucei Methionyl-tRNA synthetase inhibitors., Huang W, Zhang Z, Barros-Alvarez X, Koh CY, Ranade RM, Gillespie JR, Creason SA, Shibata S, Verlinde CL, Hol WG, Buckner FS, Fan E, Eur J Med Chem. 2016 Nov 29;124:1081-1092. doi: 10.1016/j.ejmech.2016.10.024., Epub 2016 Oct 14. PMID:27788467

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (174 Kb) [Save to disk] Biological Unit Coordinates (5j5a.pdb1.gz) 86 Kb Biological Unit Coordinates (5j5a.pdb2.gz) 86 Kb LPC: Ligand-Protein Contacts for 5J5A CSU: Contacts of Structural Units for 5J5A Structure Factors (3427 Kb) Retrieve 5J5A in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5J5A from S2C, [Save to disk] Re-refined 5j5a structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

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Visual 3D analysis of 5J5A

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Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5j5a_B] [5j5a] [5j5a_A] SWISS-PROT database: Domain organization of by SWISSPFAM

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