5J6D Oxidoreductase Inhibitor date Apr 04, 2016
title Discovery Of Acyl Guanidine Tryptophan Hydroxylase-1 Inhibit
authors A.J.Stein, D.R.Goldberg, S.De Lombaert
compound source
Molecule: Tryptophan 5-Hydroxylase 1
Chain: A, B
Fragment: Unp Residues 102-402
Synonym: Tryptophan 5-Monooxygenase 1
Ec: 1.14.16.4
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Tph1, Tph, Tprh, Trph
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet21
symmetry Space Group: P 21 21 21
R_factor 0.210 R_Free 0.248
crystal
cell
length a length b length c angle alpha angle beta angle gamma
58.726 63.561 156.468 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.90 Å
ligand 6H5, FE, GOL, TRS enzyme Oxidoreductase E.C.1.14.16.4 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceDiscovery of acyl guanidine tryptophan hydroxylase-1 inhibitors., Goldberg DR, De Lombaert S, Aiello R, Bourassa P, Barucci N, Zhang Q, Paralkar V, Stein AJ, Valentine J, Zavadoski W, Bioorg Med Chem Lett. 2016 Jun 15;26(12):2855-60. doi:, 10.1016/j.bmcl.2016.04.057. Epub 2016 Apr 21. PMID:27146606
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (94 Kb) [Save to disk]
  • Biological Unit Coordinates (5j6d.pdb1.gz) 50 Kb
  • Biological Unit Coordinates (5j6d.pdb2.gz) 39 Kb
  • Biological Unit Coordinates (5j6d.pdb3.gz) 87 Kb
  • LPC: Ligand-Protein Contacts for 5J6D
  • CSU: Contacts of Structural Units for 5J6D
  • Structure Factors (999 Kb)
  • Retrieve 5J6D in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5J6D from S2C, [Save to disk]
  • Re-refined 5j6d structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5J6D in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5J6D
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5j6d_A] [5j6d] [5j6d_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5J6D
  • Community annotation for 5J6D at PDBWiki (http://pdbwiki.org)

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science