5J81 Viral Protein date Apr 07, 2016
title Crystal Structure Of Glycoprotein C From Puumala Virus In Th Fusion Conformation (Ph 6.0)
authors S.Willensky, M.Dessau
compound source
Molecule: Envelopment Polyprotein
Chain: A
Synonym: M Polyprotein
Engineered: Yes
 Organism_scientific: Puumala Virus (Strain P360)
Organism_taxid: 39001
Strain: P360
Gene: Gp
Expression_system: Trichoplusia Ni
Expression_system_common: Cabbage Looper
Expression_system_taxid: 7111
symmetry Space Group: H 3 2
R_factor 0.183 R_Free 0.209
crystal
cell
length a length b length c angle alpha angle beta angle gamma
96.430 96.430 247.110 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.80 Å
ligand ACT, BMA, NAG, P33, SO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (141 Kb) [Save to disk]
  • Biological Unit Coordinates (5j81.pdb1.gz) 400 Kb
  • LPC: Ligand-Protein Contacts for 5J81
  • CSU: Contacts of Structural Units for 5J81
  • Structure Factors (369 Kb)
  • Retrieve 5J81 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5J81 from S2C, [Save to disk]
  • Re-refined 5j81 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5J81 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5J81
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5j81] [5j81_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5J81
  • Community annotation for 5J81 at PDBWiki (http://pdbwiki.org)

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