5JNT Hydrolase date Apr 30, 2016
title Crystal Structure Of Human Low Molecular Weight Protein Tyro Phosphatase (Lmptp) Type A Complexed With Mes
authors S.M.Stanford, A.E.Aleshin, R.C.Liddington, L.Bankston, G.Cadwell N.Bottini
compound source
Molecule: Low Molecular Weight Phosphotyrosine Protein Phos
Chain: A
Synonym: Lmw-Ptpase,Adipocyte Acid Phosphatase,Low Molecula Cytosolic Acid Phosphatase,Red Cell Acid Phosphatase 1;
Ec: 3.1.3.48
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Acp1
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgex-4t
symmetry Space Group: P 21 21 21
R_factor 0.135 R_Free 0.166
crystal
cell
length a length b length c angle alpha angle beta angle gamma
33.905 55.018 96.423 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.45 Å
ligand DMS, EDO, MES enzyme Hydrolase E.C.3.1.3.48 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A
  • protein tyrosine phosphatase...
  • non-membrane spanning protei...


  • Primary referenceDiabetes reversal by inhibition of the low-molecular-weight tyrosine phosphatase., Stanford SM, Aleshin AE, Zhang V, Ardecky RJ, Hedrick MP, Zou J, Ganji SR, Bliss MR, Yamamoto F, Bobkov AA, Kiselar J, Liu Y, Cadwell GW, Khare S, Yu J, Barquilla A, Chung TD, Mustelin T, Schenk S, Bankston LA, Liddington RC, Pinkerton AB, Bottini N, Nat Chem Biol. 2017 Mar 27. doi: 10.1038/nchembio.2344. PMID:28346406
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (62 Kb) [Save to disk]
  • Biological Unit Coordinates (5jnt.pdb1.gz) 57 Kb
  • LPC: Ligand-Protein Contacts for 5JNT
  • CSU: Contacts of Structural Units for 5JNT
  • Structure Factors (2469 Kb)
  • Retrieve 5JNT in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5JNT from S2C, [Save to disk]
  • Re-refined 5jnt structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5JNT in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5JNT
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5jnt] [5jnt_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5JNT
  • Community annotation for 5JNT at PDBWiki (http://pdbwiki.org)

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