5JZI	Protein Binding Immune System	date	May 16, 2016
title	Crystal Structure Of 1406 Tcr Bound To Hla-A2 With Hcv 1406- Antigen Peptide
authors	Y.Wang, K.H.Piepenbrink, B.M.Baker
compound		source
Molecule: Hla Class I Histocompatibility Antigen, A-2 Alpha Chain: A, F Fragment: Unp Residues 25-299 Synonym: Mhc Class I Antigen A2 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Hla-A, Hlaa Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_vector_type: Plasmid Expression_system_plasmid: Phn1
Molecule: Beta-2-Microglobulin Chain: B, G Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: B2m, Cdabp0092, Hdcma22p Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Xl1-Blue Expression_system_vector_type: Plamid Expression_system_plasmid: Phn1
Molecule: Klv Peptide Chain: C, H Engineered: Yes		Synthetic: Yes Organism_scientific: Hepatitis C Virus Organism_taxid: 11103
Molecule: Hcv1406 Tcr Alpha Chain Chain: D, I Engineered: Yes		Organism_scientific: Homo Sapiens Organism_taxid: 9606 Expression_system: Escherichia Coli 'Bl21-Gold(De3)Plyss Ag Expression_system_taxid: 866768 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pgmt7
Molecule: Hcv1406 Tcr Beta Chain Chain: E, J Engineered: Yes		Organism_scientific: Homo Sapiens Organism_taxid: 9606 Expression_system: Escherichia Coli 'Bl21-Gold(De3)Plyss Ag Expression_system_taxid: 866768 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pgmt7
symmetry	Space Group: P 31 2 1	R_factor 0.196 R_Free 0.232
crystal cell	length a length b length c angle alpha angle beta angle gamma 128.760 128.760 223.590 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	2.50 Å
Gene Ontology	Chain Function Process Component G, B cellular response to iron io...
Primary reference	How an alloreactive T-cell receptor achieves peptide and MHC specificity., Wang Y, Singh NK, Spear TT, Hellman LM, Piepenbrink KH, McMahan RH, Rosen HR, Vander Kooi CW, Nishimura MI, Baker BM, Proc Natl Acad Sci U S A. 2017 Jun 13;114(24):E4792-E4801. doi:, 10.1073/pnas.1700459114. Epub 2017 Jun 1. PMID:28572406

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (821 Kb) [Save to disk] Biological Unit Coordinates (5jzi.pdb1.gz) 408 Kb Biological Unit Coordinates (5jzi.pdb2.gz) 409 Kb CSU: Contacts of Structural Units for 5JZI Structure Factors (1013 Kb) Retrieve 5JZI in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5JZI from S2C, [Save to disk] Re-refined 5jzi structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5JZI in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5JZI

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5jzi_E] [5jzi_G] [5jzi_D] [5jzi_B] [5jzi_F] [5jzi_C] [5jzi_I] [5jzi_J] [5jzi_A] [5jzi_H] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 5JZI

Community annotation for 5JZI at PDBWiki (http://pdbwiki.org)

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---