5KRA	Transcription	date	Jul 07, 2016
title	Crystal Structure Of The Er-Alpha Ligand-Binding Domain (Y53 Complex With Ddt And Dde
authors	J.C.Nwachukwu, S.Srinivasan, N.E.Bruno, J.Nowak, D.J.Kojetin, O.E J.A.Katzenellenbogen, K.W.Nettles
compound		source
Molecule: Estrogen Receptor Chain: A, B, E, F Fragment: Ligand-Binding Domain Synonym: Er,Er-Alpha,Estradiol Receptor,Nuclear Receptor Su Group A Member 1; Engineered: Yes Mutation: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Esr1, Esr, Nr3a1 Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid
Molecule: Ncoa2 Chain: C, D, G, H Fragment: Nuclear Receptor-Interacting Peptide Engineered: Yes		Synthetic: Yes Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Other_details: This Sequence Occurs Naturally In Humans
symmetry	Space Group: P 1 21 1	R_factor 0.204 R_Free 0.249
crystal cell	length a length b length c angle alpha angle beta angle gamma 58.580 82.960 104.970 90.00 101.12 90.00
method	X-Ray Diffraction	resolution	2.40 Å
ligand	6WS, 6WT	enzyme

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (329 Kb) [Save to disk] Biological Unit Coordinates (5kra.pdb1.gz) 159 Kb Biological Unit Coordinates (5kra.pdb2.gz) 163 Kb LPC: Ligand-Protein Contacts for 5KRA CSU: Contacts of Structural Units for 5KRA Structure Factors (448 Kb) Retrieve 5KRA in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5KRA from S2C, [Save to disk] Re-refined 5kra structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5KRA in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5KRA

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5kra_F] [5kra_H] [5kra_G] [5kra_E] [5kra_C] [5kra_A] [5kra_D] [5kra] [5kra_B] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 5KRA

Community annotation for 5KRA at PDBWiki (http://pdbwiki.org)

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---