5LAL Plant Protein date Jun 14, 2016
title Structure Of Arabidopsis Dirigent Protein Atdir6
authors R.Gasper, P.Kolesinski, B.Terlecka, I.Effenberger, A.Schaller, E.
compound source
Molecule: Dirigent Protein 6
Chain: A, B
Synonym: Atdir6
Engineered: Yes
 Organism_scientific: Arabidopsis Thaliana
Organism_common: Thale Cress
Organism_taxid: 3702
Gene: Dir6, At4g23690, F9d16.160
Expression_system: Arabidopsis Thaliana
Expression_system_common: Thale Cress
Expression_system_taxid: 3702
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Part27
symmetry Space Group: H 3
R_factor 0.169 R_Free 0.186
crystal
cell
length a length b length c angle alpha angle beta angle gamma
101.090 101.090 90.240 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.40 Å
ligand BMA, EDO, FUC, GLY, MAN, NAG, XYP enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceDirigent Protein Mode of Action Revealed by the Crystal Structure of AtDIR6., Gasper R, Effenberger I, Kolesinski P, Terlecka B, Hofmann E, Schaller A, Plant Physiol. 2016 Dec;172(4):2165-2175. Epub 2016 Oct 17. PMID:27756822
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (123 Kb) [Save to disk]
  • Biological Unit Coordinates (5lal.pdb1.gz) 166 Kb
  • Biological Unit Coordinates (5lal.pdb2.gz) 172 Kb
  • LPC: Ligand-Protein Contacts for 5LAL
  • CSU: Contacts of Structural Units for 5LAL
  • Structure Factors (592 Kb)
  • Retrieve 5LAL in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5LAL from S2C, [Save to disk]
  • Re-refined 5lal structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5LAL in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5LAL
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5lal] [5lal_B] [5lal_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5LAL
  • Community annotation for 5LAL at PDBWiki (http://pdbwiki.org)

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science