5LGN	Oxidoreductase	date	Jul 07, 2016
title	Thieno[3,2-B]Pyrrole-5-Carboxamides As Novel Reversible Inhi Histone Lysine Demethylase Kdm1alsd1: Compound 19
authors	A.Mattevi, G.Ciossani
compound		source
Molecule: Lysine-Specific Histone Demethylase 1a Chain: A Synonym: Braf35-Hdac Complex Protein Bhc110,Flavin-Containi Oxidase Domain-Containing Protein 2; Ec: 1.-.-.- Engineered: Yes Other_details: The Fad Cofactor Is Integral Part Of The Pro Chain;		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Kdm1a, Aof2, Kdm1, Kiaa0601, Lsd1 Expression_system: Escherichia Coli Expression_system_taxid: 511693 Expression_system_strain: Bl21
Molecule: Rest Corepressor 1 Chain: B Synonym: Protein Corest Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Rcor1, Kiaa0071, Rcor Expression_system: Escherichia Coli Expression_system_taxid: 511693 Expression_system_strain: Bl21
symmetry	Space Group: I 2 2 2	R_factor 0.193 R_Free 0.220
crystal cell	length a length b length c angle alpha angle beta angle gamma 120.510 180.440 235.420 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	3.20 Å
ligand	6W0, FAD	enzyme	Oxidoreductase E.C.1 BRENDA
Gene Ontology	Chain Function Process Component A
Primary reference	Thieno[3,2-b]pyrrole-5-carboxamides as New Reversible Inhibitors of Histone Lysine Demethylase KDM1A/LSD1. Part 1: High-Throughput Screening and Preliminary Exploration., Sartori L, Mercurio C, Amigoni F, Cappa A, Faga G, Fattori R, Legnaghi E, Ciossani G, Mattevi A, Meroni G, Moretti L, Cecatiello V, Pasqualato S, Romussi A, Thaler F, Trifiro P, Villa M, Vultaggio S, Botrugno OA, Dessanti P, Minucci S, Zagarri E, Carettoni D, Iuzzolino L, Varasi M, Vianello P, J Med Chem. 2017 Feb 27. doi: 10.1021/acs.jmedchem.6b01018. PMID:28186755

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (136 Kb) [Save to disk] Biological Unit Coordinates (5lgn.pdb1.gz) 130 Kb LPC: Ligand-Protein Contacts for 5LGN CSU: Contacts of Structural Units for 5LGN Structure Factors (904 Kb) Retrieve 5LGN in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5LGN from S2C, [Save to disk] Re-refined 5lgn structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5LGN in 3D

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Visual 3D analysis of 5LGN

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5lgn_A] [5lgn] [5lgn_B] SWISS-PROT database: Domain organization of by SWISSPFAM

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