5LPI Cell Cycle date Aug 13, 2016
title Structure Of The Zinc Finger Array Of Cep104
authors M.Van Breugel, M.Yu, C.Al Jassar
compound source
Molecule: Centrosomal Protein Of 104 Kda
Chain: D, C, A, B
Fragment: Unp Residues 746-875
Synonym: Cep104
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Cep104, Kiaa0562
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_variant: Rosetta
symmetry Space Group: P 21 21 21
R_factor 0.192 R_Free 0.229
crystal
cell
length a length b length c angle alpha angle beta angle gamma
74.149 80.320 118.130 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.80 Å
ligand ZN enzyme
Primary referenceThe Ciliopathy-Associated Cep104 Protein Interacts with Tubulin and Nek1 Kinase., Al-Jassar C, Andreeva A, Barnabas DD, McLaughlin SH, Johnson CM, Yu M, van Breugel M, Structure. 2017 Jan 3;25(1):146-156. doi: 10.1016/j.str.2016.11.014. Epub 2016, Dec 22. PMID:28017521
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (203 Kb) [Save to disk]
  • Biological Unit Coordinates (5lpi.pdb1.gz) 51 Kb
  • Biological Unit Coordinates (5lpi.pdb2.gz) 52 Kb
  • Biological Unit Coordinates (5lpi.pdb3.gz) 50 Kb
  • Biological Unit Coordinates (5lpi.pdb4.gz) 51 Kb
  • LPC: Ligand-Protein Contacts for 5LPI
  • CSU: Contacts of Structural Units for 5LPI
  • Structure Factors (4422 Kb)
  • Retrieve 5LPI in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5LPI from S2C, [Save to disk]
  • Re-refined 5lpi structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5LPI in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5LPI
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5lpi_C] [5lpi_B] [5lpi] [5lpi_D] [5lpi_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5LPI
  • Community annotation for 5LPI at PDBWiki (http://pdbwiki.org)

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science