5LQ0 Calcium Binding Protein date Aug 15, 2016
title Crystal Structure Of Tyr24 Phosphorylated Annexin A2 At 2.9 Resolution
authors P.Ecsedi, G.Gogl, B.Kiss, L.Nyitray
compound source
Molecule: Annexin A2
Chain: A, B
Synonym: Annexin II,Annexin-2,Calpactin I Heavy Chain,Calpa Heavy Chain,Chromobindin-8,Lipocortin II,Placental Anticoag Protein Iv,Pap-Iv,Protein I,P36;
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Anxa2, Anx2, Anx2l4, Cal1h, Lpc2d
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 21
R_factor 0.227 R_Free 0.260
crystal
cell
length a length b length c angle alpha angle beta angle gamma
56.450 63.470 268.910 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.90 Å
ligand CA, PTR enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B
  • phospholipase inhibitor acti...
  • serine-type endopeptidase in...
  • calcium channel activity
  • phospholipase A2 inhibitor a...
  • cadherin binding involved in...


  • Primary referenceRegulation of the Equilibrium between Closed and Open Conformations of Annexin A2 by N-Terminal Phosphorylation and S100A4-Binding., Ecsedi P, Kiss B, Gogl G, Radnai L, Buday L, Koprivanacz K, Liliom K, Leveles I, Vertessy B, Jeszenoi N, Hetenyi C, Schlosser G, Katona G, Nyitray L, Structure. 2017 Aug 1;25(8):1195-1207.e5. doi: 10.1016/j.str.2017.06.001. Epub, 2017 Jun 29. PMID:28669632
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (214 Kb) [Save to disk]
  • Biological Unit Coordinates (5lq0.pdb1.gz) 105 Kb
  • Biological Unit Coordinates (5lq0.pdb2.gz) 105 Kb
  • LPC: Ligand-Protein Contacts for 5LQ0
  • CSU: Contacts of Structural Units for 5LQ0
  • Structure Factors (430 Kb)
  • Retrieve 5LQ0 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5LQ0 from S2C, [Save to disk]
  • Re-refined 5lq0 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5LQ0 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5LQ0
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5lq0_A] [5lq0_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5LQ0
  • Community annotation for 5LQ0 at PDBWiki (http://pdbwiki.org)

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