5LV6 Transferase date Sep 12, 2016
title N-Terminal Motif Dimerization Of Egfr Transmembrane Domain I Environment
authors P.Bragin, E.Bocharov, K.Mineev, O.Bocharova, A.Arseniev
compound source
Molecule: Epidermal Growth Factor Receptor
Chain: A, B
Synonym: Proto-Oncogene C-Erbb-1,Receptor Tyrosine-Protein Erbb-1;
Ec: 2.7.10.1
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Egfr, Erbb, Erbb1, Her1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
methodSolution NMR
ligand
enzyme Transferase E.C.2.7.10.1 BRENDA
Primary referenceThe Conformation of the Epidermal Growth Factor Receptor Transmembrane Domain Dimer Dynamically Adapts to the Local Membrane Environment., Bocharov EV, Bragin PE, Pavlov KV, Bocharova OV, Mineev KS, Polyansky AA, Volynsky PE, Efremov RG, Arseniev AS, Biochemistry. 2017 Mar 28;56(12):1697-1705. doi: 10.1021/acs.biochem.6b01085., Epub 2017 Mar 17. PMID:28291355
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (465 Kb) [Save to disk]
  • Biological Unit Coordinates (5lv6.pdb1.gz) 24 Kb
  • CSU: Contacts of Structural Units for 5LV6
  • Original NMR restraints for 5LV6 from PDB
  • Retrieve 5LV6 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5LV6 from S2C, [Save to disk]
    • View 5LV6 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5LV6
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5lv6] [5lv6_B] [5lv6_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5LV6
  • Community annotation for 5LV6 at PDBWiki (http://pdbwiki.org)

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