5TTU Transferase Transferase Inhibitor date Nov 04, 2016
title Jak3 With Covalent Inhibitor 7
authors F.F.Vajdos
compound source
Molecule: Tyrosine-Protein Kinase Jak3
Chain: A
Fragment: Kinase Domain (Unp Residues 812-1124)
Synonym: Janus Kinase 3,Jak-3,Leukocyte Janus Kinase,L-Jak
Ec: 2.7.10.2
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Jak3
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
Expression_system_cell_line: Sf21
Expression_system_vector_type: Baculovirus
symmetry Space Group: P 21 21 21
R_factor 0.192 R_Free 0.212
crystal
cell
length a length b length c angle alpha angle beta angle gamma
47.200 75.750 90.110 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.72 Å
ligand 7KV, SO4 enzyme Transferase E.C.2.7.10.2 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceDesign of a Janus Kinase 3 (JAK3) Specific Inhibitor 1-((2S,5R)-5-((7H-Pyrrolo[2,3-d]pyrimidin-4-yl)amino)-2-methylpiperidin-1-yl)prop -2-en-1-one (PF-06651600) Allowing for the Interrogation of JAK3 Signaling in Humans., Thorarensen A, Dowty ME, Banker ME, Juba B, Jussif J, Lin T, Vincent F, Czerwinski RM, Casimiro-Garcia A, Unwalla R, Trujillo JI, Liang S, Balbo P, Che Y, Gilbert AM, Brown MF, Hayward M, Montgomery J, Leung L, Yang X, Soucy S, Hegen M, Coe J, Langille J, Vajdos F, Chrencik J, Telliez JB, J Med Chem. 2017 Feb 16. doi: 10.1021/acs.jmedchem.6b01694. PMID:28139931
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (55 Kb) [Save to disk]
  • Biological Unit Coordinates (5ttu.pdb1.gz) 50 Kb
  • LPC: Ligand-Protein Contacts for 5TTU
  • CSU: Contacts of Structural Units for 5TTU
  • Structure Factors (965 Kb)
  • Retrieve 5TTU in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5TTU from S2C, [Save to disk]
  • Re-refined 5ttu structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5TTU in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5TTU
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5ttu_A] [5ttu]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5TTU
  • Community annotation for 5TTU at PDBWiki (http://pdbwiki.org)

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