5VWM	Hydrolase Hydrolase Inhibitor	date	May 22, 2017
title	Crystal Structure Of Udp-3-O-[3-Hydroxymyristoyl] N-Acetylgl Deacetylase (Lpxc) From Pseudomonas Aeruginosa In Complex W 090 Inhibitor
authors	Seattle Structural Genomics Center For Infectious Disease (S
compound		source
Molecule: Udp-3-O-Acyl-N-Acetylglucosamine Deacetylase Chain: A Synonym: Udp-3-O-Acyl-Glcnac Deacetylase,Udp-3-O-[R-3- Hydroxymyristoyl]-N-Acetylglucosamine Deacetylase; Ec: 3.5.1.108 Engineered: Yes		Organism_scientific: Pseudomonas Aeruginosa (Strain Atcc 15 22644 Cip 104116 Jcm 14847 Lmg 12228 1c Prs 101 Organism_taxid: 208964 Strain: Atcc 15692 Dsm 22644 Cip 104116 Jcm 14847 L 1c Prs 101 Pao1; Gene: Lpxc, Enva, Pa4406 Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Psaea.00166.A.Dg15
symmetry	Space Group: P 1	R_factor 0.138 R_Free 0.179
crystal cell	length a length b length c angle alpha angle beta angle gamma 35.850 47.590 48.410 111.30 109.00 98.39
method	X-Ray Diffraction	resolution	1.80 Å
ligand	C90, CA, CL, EDO, ZN	enzyme	Hydrolase E.C.3.5.1.108 BRENDA
Gene Ontology	Chain Function Process Component A

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (111 Kb) [Save to disk] Biological Unit Coordinates (5vwm.pdb1.gz) 104 Kb LPC: Ligand-Protein Contacts for 5VWM CSU: Contacts of Structural Units for 5VWM Structure Factors (522 Kb) Retrieve 5VWM in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5VWM from S2C, [Save to disk] Re-refined 5vwm structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5VWM in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5VWM

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5vwm_A] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 5VWM

Community annotation for 5VWM at PDBWiki (http://pdbwiki.org)

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---