5WPT	Cryo-EM structure of mammalian endolysosomal TRPML1 channel in nanodiscs in closed II conformation at 3.75 Angstrom resolution	date
authors	Chen, Q., She, J., Guo, J., Bai, X., Jiang, Y.
compound		source
symmetry		R_factor R_Free
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution	3.75
ligand	NA, NAG	enzyme
Gene Ontology	Chain Function Process Component A, D, C, B ligand-gated calcium channel...
Primary reference	Structure of mammalian endolysosomal TRPML1 channel in nanodiscs., Chen Q, She J, Zeng W, Guo J, Xu H, Bai XC, Jiang Y, Nature. 2017 Oct 19;550(7676):415-418. doi: 10.1038/nature24035. Epub 2017 Oct, 11. PMID:29019981

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (270 Kb) [Save to disk] Biological Unit Coordinates (5wpt.pdb1.gz) 263 Kb LPC: Ligand-Protein Contacts for 5WPT CSU: Contacts of Structural Units for 5WPT Retrieve 5WPT in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5WPT from S2C, [Save to disk]

View 5WPT in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5WPT

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5wpt_A] [5wpt_C] [5wpt_B] [5wpt_D] SWISS-PROT database: Domain organization of by SWISSPFAM

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Community annotation for 5WPT at PDBWiki (http://pdbwiki.org)

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