Structure based on 4kew

Ideal structure
Name: 6-methoxy-2-{[(4-methoxy-3,5-dimethylpyridin-2-yl)methyl]sulfanyl}-1h-benzimidazole
Formula: C17 H19 N3 O2 S
Weight: 329.417
SMILES: "COc1ccc2nc([nH]c2c1)SCc3ncc(C)c(OC)c3C"
Spacial conformation based on PDB 4kew.
Also present on 4key, 4o4p, 8dme, 8dmg
RESIDUE   1C6     42
CONECT      S      2 CB   CF1 
CONECT      CB     4 S    CG   H1   H2  
CONECT      CG     3 CB   CD1  N1  
CONECT      CD1    3 CG   C3   CE1 
CONECT      C3     4 CD1  H3   H4   H5  
CONECT      CE1    3 CD1  O2   CZ  
CONECT      O2     2 CE1  C2  
CONECT      C2     4 O2   H6   H7   H8  
CONECT      CZ     3 CE1  C1   CE2 
CONECT      C1     4 CZ   H9   H10  H11 
CONECT      CE2    3 CZ   N1   H12 
CONECT      N1     2 CG   CE2 
CONECT      CF1    3 S    NV   NE1 
CONECT      NV     3 CF1  CX2  H13 
CONECT      CX2    3 NV   CS2  CE3 
CONECT      CS2    3 CX2  NE1  CZ2 
CONECT      NE1    2 CF1  CS2 
CONECT      CE3    3 CX2  CZ3  H15 
CONECT      CZ3    3 CE3  O3   CH2 
CONECT      O3     2 CZ3  C4  
CONECT      C4     4 O3   H16  H17  H18 
CONECT      CH2    3 CZ3  CZ2  H19 
CONECT      CZ2    3 CS2  CH2  H20 
CONECT      H1     1 CB  
CONECT      H2     1 CB  
CONECT      H3     1 C3  
CONECT      H4     1 C3  
CONECT      H5     1 C3  
CONECT      H6     1 C2  
CONECT      H7     1 C2  
CONECT      H8     1 C2  
CONECT      H9     1 C1  
CONECT      H10    1 C1  
CONECT      H11    1 C1  
CONECT      H12    1 CE2 
CONECT      H13    1 NV  
CONECT      H15    1 CE3 
CONECT      H16    1 C4  
CONECT      H17    1 C4  
CONECT      H18    1 C4  
CONECT      H19    1 CH2 
CONECT      H20    1 CZ2 
END   
HET    1C6             42
HETSYN     1C6 omeprazole; prilosec
HETNAM     1C6 6-methoxy-2-{[(4-methoxy-3,5-dimethylpyridin-2-yl)methy
HETNAM   2 1C6 l]sulfanyl}-1H-benzimidazole
FORMUL      1C6    C17 H19 N3 O2 S

This OCA MONOMER page
uses Jmol, developed by the Jmol Development Team (color reference)
OCA© by Jaime Prilusky, 1996-2004,2006,2010,2014
Bioinformatics Unit
Weizmann Institute of Science