Structure based on 4otf

Ideal structure
Name: n-{3-[6-({4-[(2r)-1,4-dimethyl-3-oxopiperazin-2-yl]phenyl}amino)-4-methyl-5-oxo-4,5-dihydropyrazin-2-yl]-2-methylphenyl}-4,5,6,7-tetrahydro-1-benzothiophene-2-carboxamide
Formula: C33 H36 N6 O3 S
Weight: 596.742
SMILES: "CN1CCN(C)C(=O)[CH]1c2ccc(NC3=NC(=CN(C)C3=O)c4cccc(NC(=O)c5sc6CCCCc6c5)c4C)cc2"
Spacial conformation based on PDB 4otf.
Also present on 5p9f
RESIDUE   2VL     79
CONECT      C1     4 C2   H1   H2   H3  
CONECT      C2     3 C1   C3   C7  
CONECT      C3     3 C2   C4   C20 
CONECT      C4     3 C3   C5   H4  
CONECT      C5     3 C4   C6   H5  
CONECT      C6     3 C5   C7   H6  
CONECT      C7     3 C2   C6   N8  
CONECT      N8     3 C7   C9   H7  
CONECT      C9     3 N8   O10  C11 
CONECT      O10    1 C9  
CONECT      C11    3 C9   C12  S15 
CONECT      C12    3 C11  C13  H8  
CONECT      C13    3 C12  C14  C19 
CONECT      C14    3 C13  S15  C16 
CONECT      S15    2 C11  C14 
CONECT      C16    4 C14  C17  H9   H10 
CONECT      C17    4 C16  C18  H11  H12 
CONECT      C18    4 C17  C19  H13  H14 
CONECT      C19    4 C13  C18  H15  H16 
CONECT      C20    3 C3   C21  N26 
CONECT      C21    3 C20  N22  H17 
CONECT      N22    3 C21  C23  C44 
CONECT      C23    3 N22  O24  C25 
CONECT      O24    1 C23 
CONECT      C25    3 C23  N26  N27 
CONECT      N26    2 C20  C25 
CONECT      N27    3 C25  C28  H18 
CONECT      C28    3 N27  C29  C33 
CONECT      C29    3 C28  C30  H19 
CONECT      C30    3 C29  C31  H20 
CONECT      C31    3 C30  C32  C34 
CONECT      C32    3 C31  C33  H21 
CONECT      C33    3 C28  C32  H22 
CONECT      C34    4 C31  C36  N41  H23 
CONECT      C36    3 C34  O37  N38 
CONECT      O37    1 C36 
CONECT      N38    3 C36  C39  C43 
CONECT      C39    4 N38  C40  H24  H25 
CONECT      C40    4 C39  N41  H26  H27 
CONECT      N41    3 C34  C40  C42 
CONECT      C42    4 N41  H29  H30  H31 
CONECT      C43    4 N38  H32  H33  H34 
CONECT      C44    4 N22  H35  H36  H37 
CONECT      H1     1 C1  
CONECT      H2     1 C1  
CONECT      H3     1 C1  
CONECT      H4     1 C4  
CONECT      H5     1 C5  
CONECT      H6     1 C6  
CONECT      H7     1 N8  
CONECT      H8     1 C12 
CONECT      H9     1 C16 
CONECT      H10    1 C16 
CONECT      H11    1 C17 
CONECT      H12    1 C17 
CONECT      H13    1 C18 
CONECT      H14    1 C18 
CONECT      H15    1 C19 
CONECT      H16    1 C19 
CONECT      H17    1 C21 
CONECT      H18    1 N27 
CONECT      H19    1 C29 
CONECT      H20    1 C30 
CONECT      H21    1 C32 
CONECT      H22    1 C33 
CONECT      H23    1 C34 
CONECT      H24    1 C39 
CONECT      H25    1 C39 
CONECT      H26    1 C40 
CONECT      H27    1 C40 
CONECT      H29    1 C42 
CONECT      H30    1 C42 
CONECT      H31    1 C42 
CONECT      H32    1 C43 
CONECT      H33    1 C43 
CONECT      H34    1 C43 
CONECT      H35    1 C44 
CONECT      H36    1 C44 
CONECT      H37    1 C44 
END   
HET    2VL             79
HETSYN     2VL GDC0834
HETNAM     2VL N-{3-[6-({4-[(2R)-1,4-dimethyl-3-oxopiperazin-2-yl]phen
HETNAM   2 2VL yl}amino)-4-methyl-5-oxo-4,5-dihydropyrazin-2-yl]-2-met
HETNAM   3 2VL hylphenyl }-4,5,6,7-tetrahydro-1-benzothiophene-2-carbo
HETNAM   4 2VL xamide
FORMUL      2VL    C33 H36 N6 O3 S1

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Bioinformatics Unit
Weizmann Institute of Science