Structure based on 3da6

Ideal structure
Name: n-[3-methyl-4-({3-[2-(methylamino)pyrimidin-4-yl]pyridin-2-yl}oxy)naphthalen-1-yl]-1h-benzimidazol-2-amine
Formula: C28 H23 N7 O
Weight: 473.529
SMILES: "CNc1nccc(n1)c2cccnc2Oc3c(C)cc(Nc4[nH]c5ccccc5n4)c6ccccc36"
Spacial conformation based on PDB 3da6
RESIDUE   BZ9     59
CONECT      N1     3 C9   C3   HN1 
CONECT      C4     3 C5   N2   C3  
CONECT      C5     3 C4   C6   H5  
CONECT      C6     3 C5   C7   H6  
CONECT      C7     3 C6   C8   H7  
CONECT      C8     3 C7   C3   H8  
CONECT      C10    3 C15  C17  C11 
CONECT      C13    3 C14  C12  H13 
CONECT      C15    3 C10  C14  H15 
CONECT      C17    3 C10  O33  C18 
CONECT      C20    3 C19  C11  N16 
CONECT      C21    3 C22  C26  C28 
CONECT      C22    3 C21  C23  H22 
CONECT      C24    3 C23  N25  H24 
CONECT      C26    3 C21  N25  O33 
CONECT      C28    3 C21  N27  C29 
CONECT      C35    4 N34  H35  H35A H221
CONECT      N34    3 C35  C32  H231
CONECT      C32    3 N34  N27  N31 
CONECT      N27    2 C28  C32 
CONECT      N31    2 C32  C30 
CONECT      C30    3 N31  C29  H30 
CONECT      C29    3 C28  C30  H29 
CONECT      C23    3 C22  C24  H23 
CONECT      N25    2 C24  C26 
CONECT      O33    2 C17  C26 
CONECT      C18    3 C17  C36  C19 
CONECT      C36    4 C18  H36  H36A H36B
CONECT      C19    3 C20  C18  H19 
CONECT      C14    3 C13  C15  H14 
CONECT      C12    3 C13  C11  H12 
CONECT      C11    3 C10  C20  C12 
CONECT      N16    3 C20  C9   HN16
CONECT      C9     3 N1   N16  N2  
CONECT      N2     2 C4   C9  
CONECT      C3     3 N1   C4   C8  
CONECT      H5     1 C5  
CONECT      H6     1 C6  
CONECT      H7     1 C7  
CONECT      H8     1 C8  
CONECT      H13    1 C13 
CONECT      H15    1 C15 
CONECT      H22    1 C22 
CONECT      H24    1 C24 
CONECT      H35    1 C35 
CONECT      H35A   1 C35 
CONECT      H30    1 C30 
CONECT      H29    1 C29 
CONECT      H23    1 C23 
CONECT      H36    1 C36 
CONECT      H36A   1 C36 
CONECT      H36B   1 C36 
CONECT      H19    1 C19 
CONECT      H14    1 C14 
CONECT      H12    1 C12 
CONECT      HN16   1 N16 
CONECT      HN1    1 N1  
CONECT      H221   1 C35 
CONECT      H231   1 N34 
END   
HET    BZ9             59
HETNAM     BZ9 N-[3-methyl-4-({3-[2-(methylamino)pyrimidin-4-yl]pyridi
HETNAM   2 BZ9 n-2-yl}oxy)naphthalen-1-yl]-1H-benzimidazol-2-amine
FORMUL      BZ9    C28 H23 N7 O1

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uses Jmol, developed by the Jmol Development Team (color reference)
OCA© by Jaime Prilusky, 1996-2004,2006,2010,2014
Bioinformatics Unit
Weizmann Institute of Science