| open in new windowCATH | Hierarchical classification database |
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| open in new windowCOPS | Classification of protein structures by quantification structural similarities |
| open in new windowSCOP | Hierarchical classification database |
| open in new windowPTGL | Protein topologies databas |
| open in new windowThe Dali Database | Fold classification based on structure-structure alignment of proteins |
| TOPS | Protein topology cartoon server. This web service allows to submit a protein structure for calculation and presentation of topology cartoon. |
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| Server | Comparison Method | Database used |
|---|---|---|
| open in new windowCathedral server | Graph theory-based approach to align SSEs and residue based refinement |
CATH |
| open in new windowCE | Combinatorial Extension |
PDB representatives |
| open in new windowDali Server | Residue-residue distance matrices |
PDB |
| MATRAS | Markov transition model of evolution |
SCOP or PDB subsets |
| open in new windowPRIDE2 | Cα-Cα distance comparison |
CATH or PDB subsets |
| open in new windowSSM | Secondary structure matching |
SCOP or PDB |
| open in new windowTOPSCAN | Comparing topology strings. Useful as a preliminary screen |
Library of topology strings built from the PDB |
| TOPS server | Comparing topology representation (TOPS diagram) | Library of TOPS diagrams built from the PDB |
| open in new windowVAST | Graph theory-based approach to align SSEs |
PDB subsets |
| open in new windowVorolign | Comparing Voronoi-contacts in the protein structure |
PDB subsets |
| See also our structural comparison tool collection | ||
| open in new windowpKNOT | A tool to check structures for knots and to visualize them. |
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| open in new windowProtein Knots | A tool to check structures for knots and to visualize them. |
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