Analysis of interatomic Contacts of Structural Units in PDB entry:
5MKF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5MKF entry

There are 4 chains in PDB entry 5MKF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 215LYS 695
B
 LYS 215LYS 695
C
 LYS 215LYS 695
D
 LYS 215LYS 695
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 72 helices in PDB entry 5MKF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
215 242Right-handed alpha
Helix 2
AA2
A
245 258Right-handed alpha
Helix 3
AA3
A
275 286Right-handed alpha
Helix 4
AA4
A
286 292Right-handed alpha
Helix 5
AA5
A
334 339Right-handed 310
Helix 6
AA6
A
349 353Right-handed 310
Helix 7
AA7
A
398 413Right-handed alpha
Helix 8
AA8
A
469 498Right-handed alpha
Helix 9
AA9
A
505 512Right-handed alpha
Helix 10
AB1
A
512 527Right-handed alpha
Helix 11
AB2
A
528 536Right-handed alpha
Helix 12
AB3
A
537 542Right-handed alpha
Helix 13
AB4
A
548 577Right-handed alpha
Helix 14
AB5
A
581 601Right-handed alpha
Helix 15
AB6
A
601 620Right-handed alpha
Helix 16
AB7
A
628 642Right-handed alpha
Helix 17
AB8
A
645 653Right-handed alpha
Helix 18
AB9
A
655 693Right-handed alpha
Helix 19
AC1
B
216 242Right-handed alpha
Helix 20
AC2
B
245 258Right-handed alpha
Helix 21
AC3
B
275 286Right-handed alpha
Helix 22
AC4
B
286 292Right-handed alpha
Helix 23
AC5
B
334 339Right-handed 310
Helix 24
AC6
B
349 353Right-handed 310
Helix 25
AC7
B
398 413Right-handed alpha
Helix 26
AC8
B
469 498Right-handed alpha
Helix 27
AC9
B
505 512Right-handed alpha
Helix 28
AD1
B
512 527Right-handed alpha
Helix 29
AD2
B
528 536Right-handed alpha
Helix 30
AD3
B
537 542Right-handed alpha
Helix 31
AD4
B
548 577Right-handed alpha
Helix 32
AD5
B
581 601Right-handed alpha
Helix 33
AD6
B
601 620Right-handed alpha
Helix 34
AD7
B
628 642Right-handed alpha
Helix 35
AD8
B
645 653Right-handed alpha
Helix 36
AD9
B
655 693Right-handed alpha
Helix 37
AE1
C
216 242Right-handed alpha
Helix 38
AE2
C
245 258Right-handed alpha
Helix 39
AE3
C
275 286Right-handed alpha
Helix 40
AE4
C
286 292Right-handed alpha
Helix 41
AE5
C
334 339Right-handed 310
Helix 42
AE6
C
349 353Right-handed 310
Helix 43
AE7
C
398 413Right-handed alpha
Helix 44
AE8
C
469 498Right-handed alpha
Helix 45
AE9
C
505 512Right-handed alpha
Helix 46
AF1
C
512 527Right-handed alpha
Helix 47
AF2
C
528 536Right-handed alpha
Helix 48
AF3
C
537 542Right-handed alpha
Helix 49
AF4
C
548 577Right-handed alpha
Helix 50
AF5
C
581 601Right-handed alpha
Helix 51
AF6
C
601 620Right-handed alpha
Helix 52
AF7
C
628 642Right-handed alpha
Helix 53
AF8
C
645 653Right-handed alpha
Helix 54
AF9
C
655 693Right-handed alpha
Helix 55
AG1
D
216 242Right-handed alpha
Helix 56
AG2
D
245 258Right-handed alpha
Helix 57
AG3
D
275 286Right-handed alpha
Helix 58
AG4
D
286 292Right-handed alpha
Helix 59
AG5
D
334 339Right-handed 310
Helix 60
AG6
D
349 353Right-handed 310
Helix 61
AG7
D
398 413Right-handed alpha
Helix 62
AG8
D
469 498Right-handed alpha
Helix 63
AG9
D
505 512Right-handed alpha
Helix 64
AH1
D
512 527Right-handed alpha
Helix 65
AH2
D
528 536Right-handed alpha
Helix 66
AH3
D
537 542Right-handed alpha
Helix 67
AH4
D
548 577Right-handed alpha
Helix 68
AH5
D
581 601Right-handed alpha
Helix 69
AH6
D
601 620Right-handed alpha
Helix 70
AH7
D
628 642Right-handed alpha
Helix 71
AH8
D
645 653Right-handed alpha
Helix 72
AH9
D
655 693Right-handed alpha
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There are 4 sheets in PDB entry 5MKF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
391 394first strand
Strand 2
A
313 323anti-parallel
Strand 3
A
422 430anti-parallel
Strand 4
A
436 444anti-parallel
Strand 5
A
452 460anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
391 394first strand
Strand 2
B
313 323anti-parallel
Strand 3
B
422 430anti-parallel
Strand 4
B
436 444anti-parallel
Strand 5
B
452 460anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
391 394first strand
Strand 2
C
313 323anti-parallel
Strand 3
C
422 430anti-parallel
Strand 4
C
436 444anti-parallel
Strand 5
C
452 460anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
391 394first strand
Strand 2
D
313 323anti-parallel
Strand 3
D
422 430anti-parallel
Strand 4
D
436 444anti-parallel
Strand 5
D
452 460anti-parallel
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