Analysis of interatomic Contacts of Structural Units in PDB entry:
5NC5

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5NC5 entry

There are 8 chains in PDB entry 5NC5 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	HIS 1044
B	MET 1	PHE 1033
C	MET 1	PHE 1033
D	GLY 11	GLN 166
E	GLY 15	GLN 166
F	MET 1	SER 37
G	MET 1	PHE 36
H	MET 1	SER 37

There are145 helices in PDB entry 5NC5. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	1	7	Right-handed alpha
Helix 2	AA2	A	8	30	Right-handed alpha
Helix 3	AA3	A	53	61	Right-handed alpha
Helix 4	AA4	A	61	67	Right-handed alpha
Helix 5	AA5	A	99	115	Right-handed alpha
Helix 6	AA6	A	116	118	Right-handed 310
Helix 7	AA7	A	119	125	Right-handed alpha
Helix 8	AA8	A	150	162	Right-handed alpha
Helix 9	AA9	A	162	169	Right-handed alpha
Helix 10	AB1	A	189	196	Right-handed alpha
Helix 11	AB2	A	199	211	Right-handed alpha
Helix 12	AB3	A	242	248	Right-handed alpha
Helix 13	AB4	A	298	314	Right-handed alpha
Helix 14	AB5	A	315	317	Right-handed 310
Helix 15	AB6	A	330	360	Right-handed alpha
Helix 16	AB7	A	361	386	Right-handed alpha
Helix 17	AB8	A	391	424	Right-handed alpha
Helix 18	AB9	A	426	454	Right-handed alpha
Helix 19	AC1	A	455	459	Right-handed 310
Helix 20	AC2	A	460	497	Right-handed alpha
Helix 21	AC3	A	511	536	Right-handed alpha
Helix 22	AC4	A	537	559	Right-handed alpha
Helix 23	AC5	A	583	601	Right-handed alpha
Helix 24	AC6	A	633	637	Right-handed 310
Helix 25	AC7	A	639	642	Right-handed 310
Helix 26	AC8	A	643	655	Right-handed alpha
Helix 27	AC9	A	656	658	Right-handed 310
Helix 28	AD1	A	691	707	Right-handed alpha
Helix 29	AD2	A	732	740	Right-handed alpha
Helix 30	AD3	A	742	756	Right-handed alpha
Helix 31	AD4	A	777	780	Right-handed 310
Helix 32	AD5	A	782	788	Right-handed 310
Helix 33	AD6	A	801	804	Right-handed alpha
Helix 34	AD7	A	836	850	Right-handed alpha
Helix 35	AD8	A	861	867	Right-handed alpha
Helix 36	AD9	A	872	893	Right-handed alpha
Helix 37	AE1	A	897	903	Right-handed alpha
Helix 38	AE2	A	904	919	Right-handed alpha
Helix 39	AE3	A	924	955	Right-handed alpha
Helix 40	AE4	A	959	986	Right-handed alpha
Helix 41	AE5	A	986	992	Right-handed alpha
Helix 42	AE6	A	996	1033	Right-handed alpha
Helix 43	AE7	B	2	7	Right-handed alpha
Helix 44	AE8	B	8	30	Right-handed alpha
Helix 45	AE9	B	53	61	Right-handed alpha
Helix 46	AF1	B	61	68	Right-handed alpha
Helix 47	AF2	B	99	113	Right-handed alpha
Helix 48	AF3	B	114	118	Right-handed 310
Helix 49	AF4	B	119	126	Right-handed alpha
Helix 50	AF5	B	150	162	Right-handed alpha
Helix 51	AF6	B	162	168	Right-handed alpha
Helix 52	AF7	B	189	196	Right-handed alpha
Helix 53	AF8	B	199	211	Right-handed alpha
Helix 54	AF9	B	242	248	Right-handed alpha
Helix 55	AG1	B	298	314	Right-handed alpha
Helix 56	AG2	B	315	317	Right-handed 310
Helix 57	AG3	B	329	360	Right-handed alpha
Helix 58	AG4	B	361	386	Right-handed alpha
Helix 59	AG5	B	392	401	Right-handed alpha
Helix 60	AG6	B	401	424	Right-handed alpha
Helix 61	AG7	B	426	453	Right-handed alpha
Helix 62	AG8	B	454	459	Right-handed 310
Helix 63	AG9	B	460	497	Right-handed alpha
Helix 64	AH1	B	510	536	Right-handed alpha
Helix 65	AH2	B	537	559	Right-handed alpha
Helix 66	AH3	B	583	602	Right-handed alpha
Helix 67	AH4	B	633	637	Right-handed 310
Helix 68	AH5	B	639	642	Right-handed 310
Helix 69	AH6	B	643	656	Right-handed alpha
Helix 70	AH7	B	671	675	Right-handed 310
Helix 71	AH8	B	691	707	Right-handed alpha
Helix 72	AH9	B	732	740	Right-handed alpha
Helix 73	AI1	B	742	755	Right-handed alpha
Helix 74	AI2	B	777	780	Right-handed 310
Helix 75	AI3	B	782	787	Right-handed alpha
Helix 76	AI4	B	836	849	Right-handed alpha
Helix 77	AI5	B	860	892	Right-handed alpha
Helix 78	AI6	B	898	903	Right-handed alpha
Helix 79	AI7	B	904	920	Right-handed alpha
Helix 80	AI8	B	924	956	Right-handed alpha
Helix 81	AI9	B	959	992	Right-handed alpha
Helix 82	AJ1	B	996	1033	Right-handed alpha
Helix 83	AJ2	C	2	7	Right-handed alpha
Helix 84	AJ3	C	8	30	Right-handed alpha
Helix 85	AJ4	C	53	61	Right-handed alpha
Helix 86	AJ5	C	61	67	Right-handed alpha
Helix 87	AJ6	C	99	115	Right-handed alpha
Helix 88	AJ7	C	116	118	Right-handed 310
Helix 89	AJ8	C	119	125	Right-handed alpha
Helix 90	AJ9	C	150	162	Right-handed alpha
Helix 91	AK1	C	162	168	Right-handed alpha
Helix 92	AK2	C	189	196	Right-handed alpha
Helix 93	AK3	C	199	211	Right-handed alpha
Helix 94	AK4	C	242	248	Right-handed alpha
Helix 95	AK5	C	298	314	Right-handed alpha
Helix 96	AK6	C	315	317	Right-handed 310
Helix 97	AK7	C	329	360	Right-handed alpha
Helix 98	AK8	C	361	386	Right-handed alpha
Helix 99	AK9	C	391	424	Right-handed alpha
Helix 100	AL1	C	426	452	Right-handed alpha
Helix 101	AL2	C	454	459	Right-handed 310
Helix 102	AL3	C	460	497	Right-handed alpha
Helix 103	AL4	C	511	537	Right-handed alpha
Helix 104	AL5	C	539	559	Right-handed alpha
Helix 105	AL6	C	583	601	Right-handed alpha
Helix 106	AL7	C	633	637	Right-handed 310
Helix 107	AL8	C	639	642	Right-handed 310
Helix 108	AL9	C	643	656	Right-handed alpha
Helix 109	AM1	C	691	707	Right-handed alpha
Helix 110	AM2	C	732	740	Right-handed alpha
Helix 111	AM3	C	742	756	Right-handed alpha
Helix 112	AM4	C	777	780	Right-handed 310
Helix 113	AM5	C	782	788	Right-handed 310
Helix 114	AM6	C	836	849	Right-handed alpha
Helix 115	AM7	C	860	872	Right-handed alpha
Helix 116	AM8	C	872	893	Right-handed alpha
Helix 117	AM9	C	895	903	Right-handed alpha
Helix 118	AN1	C	904	919	Right-handed alpha
Helix 119	AN2	C	924	956	Right-handed alpha
Helix 120	AN3	C	959	992	Right-handed alpha
Helix 121	AN4	C	996	1017	Right-handed alpha
Helix 122	AN5	C	1017	1033	Right-handed alpha
Helix 123	AN6	D	12	25	Right-handed alpha
Helix 124	AN7	D	26	35	Right-handed alpha
Helix 125	AN8	D	49	57	Right-handed alpha
Helix 126	AN9	D	59	69	Right-handed alpha
Helix 127	AO1	D	82	90	Right-handed alpha
Helix 128	AO2	D	92	102	Right-handed alpha
Helix 129	AO3	D	115	124	Right-handed alpha
Helix 130	AO4	D	125	135	Right-handed alpha
Helix 131	AO5	D	148	156	Right-handed alpha
Helix 132	AO6	D	158	166	Right-handed alpha
Helix 133	AO7	E	16	25	Right-handed alpha
Helix 134	AO8	E	26	35	Right-handed alpha
Helix 135	AO9	E	49	58	Right-handed alpha
Helix 136	AP1	E	59	69	Right-handed alpha
Helix 137	AP2	E	82	90	Right-handed alpha
Helix 138	AP3	E	92	102	Right-handed alpha
Helix 139	AP4	E	115	123	Right-handed alpha
Helix 140	AP5	E	125	135	Right-handed alpha
Helix 141	AP6	E	148	156	Right-handed alpha
Helix 142	AP7	E	158	166	Right-handed alpha
Helix 143	AP8	F	2	35	Right-handed alpha
Helix 144	AP9	G	2	35	Right-handed alpha
Helix 145	AQ1	H	2	36	Right-handed alpha

There are 25 sheets in PDB entry 5NC5. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	128	131	first strand
Strand 2	A	42	48	anti-parallel
Strand 3	A	87	94	anti-parallel
Strand 4	A	75	83	anti-parallel
Strand 5	A	815	819	anti-parallel
Strand 6	A	822	830	anti-parallel
Strand 7	A	679	686	anti-parallel
Strand 8	A	855	859	anti-parallel

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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	321	324	first strand
Strand 2	A	138	144	anti-parallel
Strand 3	A	287	293	anti-parallel
Strand 4	A	172	177	anti-parallel

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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	266	272	first strand
Strand 2	A	182	188	anti-parallel
Strand 3	A	771	775	parallel

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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	284	286	first strand
Strand 2	A	278	281	anti-parallel
Strand 3	A	606	613	anti-parallel
Strand 4	A	624	631	anti-parallel
Strand 5	A	571	578	anti-parallel
Strand 6	A	661	666	anti-parallel

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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	724	731	first strand
Strand 2	A	805	812	anti-parallel

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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	761	763	first strand
Strand 2	A	768	770	anti-parallel

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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	790	792	first strand
Strand 2	A	798	800	anti-parallel

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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	250	253	first strand
Strand 2	A	259	261	anti-parallel

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There are 8 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	127	131	first strand
Strand 2	B	42	48	anti-parallel
Strand 3	B	87	94	anti-parallel
Strand 4	B	75	83	anti-parallel
Strand 5	B	815	819	anti-parallel
Strand 6	B	822	830	anti-parallel
Strand 7	B	679	686	anti-parallel
Strand 8	B	855	859	anti-parallel

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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	321	324	first strand
Strand 2	B	138	144	anti-parallel
Strand 3	B	286	293	anti-parallel
Strand 4	B	172	177	anti-parallel

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There are 3 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	266	271	first strand
Strand 2	B	183	188	anti-parallel
Strand 3	B	771	775	parallel

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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	217	219	first strand
Strand 2	B	232	234	anti-parallel

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There are 5 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	278	281	first strand
Strand 2	B	606	613	anti-parallel
Strand 3	B	624	631	anti-parallel
Strand 4	B	571	578	anti-parallel
Strand 5	B	661	666	anti-parallel

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There are 2 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	724	731	first strand
Strand 2	B	805	812	anti-parallel

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There are 2 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	761	764	first strand
Strand 2	B	767	770	anti-parallel

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There are 2 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	790	792	first strand
Strand 2	B	798	800	anti-parallel

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There are 2 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	250	253	first strand
Strand 2	B	259	261	anti-parallel

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There are 8 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	128	132	first strand
Strand 2	C	42	48	anti-parallel
Strand 3	C	87	94	anti-parallel
Strand 4	C	75	83	anti-parallel
Strand 5	C	815	819	anti-parallel
Strand 6	C	822	829	anti-parallel
Strand 7	C	680	686	anti-parallel
Strand 8	C	855	859	anti-parallel

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There are 4 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	321	324	first strand
Strand 2	C	138	144	anti-parallel
Strand 3	C	287	293	anti-parallel
Strand 4	C	172	177	anti-parallel

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There are 3 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	266	272	first strand
Strand 2	C	182	188	anti-parallel
Strand 3	C	771	775	parallel

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There are 6 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	284	286	first strand
Strand 2	C	278	281	anti-parallel
Strand 3	C	606	613	anti-parallel
Strand 4	C	624	631	anti-parallel
Strand 5	C	571	577	anti-parallel
Strand 6	C	662	666	anti-parallel

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There are 2 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	724	731	first strand
Strand 2	C	805	812	anti-parallel

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There are 2 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	761	764	first strand
Strand 2	C	767	770	anti-parallel

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There are 2 strands in X sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	790	792	first strand
Strand 2	C	798	800	anti-parallel

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There are 2 strands in Y sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	250	253	first strand
Strand 2	C	259	261	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5NC5

Analysis of interatomic Contacts of Structural Units in PDB entry:
5NC5