1VRN Photosynthesis date Feb 23, 2005
title Photosynthetic Reaction Center Blastochloris Viridis (Atcc)
authors R.H.G.Baxter, B.L.Seagle, J.R.Norris
compound source
Molecule: Photosynthetic Reaction Center Cytochrome C Subun
Chain: C
Synonym: Cytochrome C558c559
 Organism_scientific: Blastochloris Viridis
Organism_taxid: 1079

Molecule: Reaction Center Protein H Chain
Chain: H
Synonym: Photosynthetic Reaction Center H Subunit
Organism_scientific: Blastochloris Viridis
Organism_taxid: 1079

Molecule: Reaction Center Protein L Chain
Chain: L
Synonym: Photosynthetic Reaction Center L Subunit
Organism_scientific: Blastochloris Viridis
Organism_taxid: 1079

Molecule: Reaction Center Protein M Chain
Chain: M
Synonym: Photosynthetic Reaction Center M Subunit
Organism_scientific: Blastochloris Viridis
Organism_taxid: 1079
symmetry Space Group: P 43 21 2
R_factor 0.191 R_Free 0.212
crystal
cell
length a length b length c angle alpha angle beta angle gamma
219.400 219.400 112.600 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.20 Å
ligand BCB, BPB, FE2, FME, HEC, LDA, MQ9, NS5, SO4, UQ7 enzyme
note 1VRN supersedes 1TXW
related structures by homologous chain: 1DXR, 6PRC
Gene
Ontology
ChainFunctionProcessComponent
C
  • electron transfer activity


    • H
  • electron transporter, transf...


    • L


    M


    Primary referenceCryogenic structure of the photosynthetic reaction center of Blastochloris viridis in the light and dark., Baxter RH, Seagle BL, Ponomarenko N, Norris JR, Acta Crystallogr D Biol Crystallogr. 2005 May;61(Pt 5):605-12. Epub 2005, Apr 20. PMID:15858271
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (226 Kb) [Save to disk]
  • Biological Unit Coordinates (1vrn.pdb1.gz) 213 Kb
  • Biological Unit Coordinates (1vrn.pdb2.gz) 421 Kb
  • LPC: Ligand-Protein Contacts for 1VRN
  • CSU: Contacts of Structural Units for 1VRN
  • Likely Quarternary Molecular Structure file(s) for 1VRN
  • Structure Factors (2126 Kb)
  • Retrieve 1VRN in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1VRN from S2C, [Save to disk]
  • Re-refined 1vrn structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1VRN in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1VRN
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1VRN, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1vrn_L] [1vrn] [1vrn_H] [1vrn_C] [1vrn_M]
  • SWISS-PROT database: [P07173] [P06008] [P06009] [P06010]
  • Domain organization of [CYCR_RHOVI] [RCEH_RHOVI] [RCEL_RHOVI] [RCEM_RHOVI] by SWISSPFAM
    • Other resources with information on 1VRN
  • Community annotation for 1VRN at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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