3PE7 Lyase date Oct 25, 2010
title Oligogalacturonate Lyase In Complex With Manganese
authors D.W.Abbott, H.J.Gilbert, A.B.Boraston
compound source
Molecule: Oligogalacturonate Lyase
Chain: A
Engineered: Yes
 Organism_scientific: Yersinia Enterocolitica Subsp. Enteroc
Organism_taxid: 393305
Strain: 8081
Gene: Ogl, Ye1876
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28a
symmetry Space Group: P 21 21 21
R_factor 0.177 R_Free 0.207
crystal
cell
length a length b length c angle alpha angle beta angle gamma
66.650 75.510 78.510 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.65 Å
ligand ACT, CA, MN enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceTHE ACTIVE SITE OF OGL PROVIDES UNIQUE INSIGHTS INTO CYTOPLASMIC OLIGOGALACTURONATE BETA-ELIMINATION., Abbott DW, Gilbert HJ, Boraston AB, J Biol Chem. 2010 Sep 17. PMID:20851883
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (74 Kb) [Save to disk]
  • Biological Unit Coordinates (3pe7.pdb1.gz) 69 Kb
  • LPC: Ligand-Protein Contacts for 3PE7
  • CSU: Contacts of Structural Units for 3PE7
  • Structure Factors (632 Kb)
  • Retrieve 3PE7 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3PE7 from S2C, [Save to disk]
  • Re-refined 3pe7 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3PE7 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3PE7
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3PE7, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3pe7] [3pe7_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 3PE7
  • Community annotation for 3PE7 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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