3ZJU	Ligase Rna	date	Jan 18, 2013
title	Ternary Complex Of E .Coli Leucyl-Trna Synthetase, Trna(Leu) Benzoxaborole An3016 In The Editing Conformation
authors	S.Cusack, A.Palencia, T.Crepin, V.Hernandez, T.Akama, S.J.Baker, W L.Feng, Y.R.Freund, L.Liu, M.Meewan, M.Mohan, W.Mao, F.L.Rock, H.S A.Sheoran, Y.Zhang, Y.Zhang, Y.Zhou, J.A.Nieman, M.R.Anugula, E.M.Keramane, K.Savariraj, D.S.Reddy, R.Sharma, R.Subedi, R.Sing A.Oleary, N.L.Simon, P.L.Demarsh, S.Mushtaq, M.Warner, D.M.Liver M.R.K.Alley, J.J.Plattner
compound		source
Molecule: Leucyl-Trna Synthetase Chain: A Synonym: Leucyl-Trna Synthetase, Leurs Ec: 6.1.1.4 Engineered: Yes		Organism_scientific: Escherichia Coli Organism_taxid: 562 Expression_system: Escherichia Coli Bl21 Expression_system_taxid: 511693 Expression_system_vector_type: Plasmid Expression_system_vector: Pet15b
Molecule: Trnaleu5 Uaa Isoacceptor Chain: B Engineered: Yes Other_details: Unmodified T7 Transcript		Synthetic: Yes Organism_scientific: Escherichia Coli K-12 Organism_taxid: 83333
symmetry	Space Group: P 21 21 21	R_factor 0.207 R_Free 0.261
crystal cell	length a length b length c angle alpha angle beta angle gamma 76.720 120.030 142.810 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.40 Å
ligand	DJF, MG	enzyme	Ligase E.C.6.1.1.4 BRENDA
Gene Ontology	Chain Function Process Component A aminoacyl-tRNA editing activ...
Primary reference	Discovery of a novel class of boron-based antibacterials with activity against gram-negative bacteria., Hernandez V, Crepin T, Palencia A, Cusack S, Akama T, Baker SJ, Bu W, Feng L, Freund YR, Liu L, Meewan M, Mohan M, Mao W, Rock FL, Sexton H, Sheoran A, Zhang Y, Zhang YK, Zhou Y, Nieman JA, Anugula MR, Keramane el M, Savariraj K, Reddy DS, Sharma R, Subedi R, Singh R, O'Leary A, Simon NL, De Marsh PL, Mushtaq S, Warner M, Livermore DM, Alley MR, Plattner JJ, Antimicrob Agents Chemother. 2013 Mar;57(3):1394-403. doi: 10.1128/AAC.02058-12. , Epub 2013 Jan 7. PMID:23295920

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (172 Kb) [Save to disk] Biological Unit Coordinates (3zju.pdb1.gz) 166 Kb LPC: Ligand-Protein Contacts for 3ZJU CSU: Contacts of Structural Units for 3ZJU Structure Factors (398 Kb) Retrieve 3ZJU in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3ZJU from S2C, [Save to disk] Re-refined 3zju structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3ZJU in 3D

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Visual 3D analysis of 3ZJU

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3ZJU, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3zju_A] [3zju_B] [3zju] SWISS-PROT database: Domain organization of by SWISSPFAM

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