5TKD	Transferase	date	Oct 06, 2016
title	Crystal Structure Of Tyrosine Kinase 2 Jh2 (Pseudo Kinase Do Complexed With 6-[(3,5-Dimethylphe Nyl)Amino]-8- (Methylami Imidazo[1,2-B]Pyridazine-3-Carbo Xamide
authors	J.K.Muckelbauer
compound		source
Molecule: Non-Receptor Tyrosine-Protein Kinase Tyk2 Chain: A, B Fragment: Pseudo Kinase Domain (Unp Residues 575-869) Ec: 2.7.10.2 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Tyk2 Expression_system: Spodoptera Frugiperda Expression_system_common: Fall Armyworm Expression_system_taxid: 7108 Expression_system_cell_line: Sf9 Expression_system_vector_type: Plasmid Expression_system_vector: Baculovirus
symmetry	Space Group: P 1 21 1	R_factor 0.192 R_Free 0.215
crystal cell	length a length b length c angle alpha angle beta angle gamma 69.599 65.702 74.702 90.00 112.42 90.00
method	X-Ray Diffraction	resolution	1.92 Å
ligand	7GL, SO4	enzyme	Transferase E.C.2.7.10.2 BRENDA
Gene Ontology	Chain Function Process Component A, B
Primary reference	Identification of imidazo[1,2-b]pyridazine TYK2 pseudokinase ligands as potent and selective allosteric inhibitors of TYK2 signalling., Moslin R, Gardner D, Santella J, Zhang Y, Duncia JV, Liu C, Lin J, Tokarski JS, Strnad J, Pedicord D, Chen J, Blat Y, Zupa-Fernandez A, Cheng L, Sun H, Chaudhry C, Huang C, D'Arienzo C, Sack JS, Muckelbauer JK, Chang C, Tredup J, Xie D, Aranibar N, Burke JR, Carter PH, Weinstein DS, Medchemcomm. 2016 Dec 15;8(4):700-712. doi: 10.1039/c6md00560h. eCollection 2017 , Apr 1. PMID:30108788

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (87 Kb) [Save to disk] Biological Unit Coordinates (5tkd.pdb1.gz) 41 Kb Biological Unit Coordinates (5tkd.pdb2.gz) 42 Kb Biological Unit Coordinates (5tkd.pdb3.gz) 81 Kb LPC: Ligand-Protein Contacts for 5TKD CSU: Contacts of Structural Units for 5TKD Structure Factors (3071 Kb) Retrieve 5TKD in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5TKD from S2C, [Save to disk] Re-refined 5tkd structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5TKD in 3D

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Visual 3D analysis of 5TKD

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5tkd] [5tkd_B] [5tkd_A] SWISS-PROT database: Domain organization of by SWISSPFAM

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