6CGD	Transferase	date	Feb 20, 2018
title	Aminoglycoside Phosphotransferase (2'')-Ia In Complex With G Magnesium, And Amikacin
authors	S.J.Caldwell, A.M.Berghuis
compound		source
Molecule: Bifunctional Aacaph Chain: A, B, C, D Ec: 2.3.1.-,2.7.1.190 Engineered: Yes Other_details: C-Terminal Domain Of Aac(6')-Ieaph(2'')-Ia Bifunctional Enzyme, Residues 175-479		Organism_scientific: Staphylococcus Aureus Organism_taxid: 1280 Gene: Aaca-Aphd, R015, Vra0030 Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_strain: Bl21(Lde3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet-22b-Aph(2'')-Ia
symmetry	Space Group: P 1 21 1	R_factor 0.172 R_Free 0.209
crystal cell	length a length b length c angle alpha angle beta angle gamma 90.080 100.220 93.990 90.00 105.12 90.00
method	X-Ray Diffraction	resolution	2.20 Å
ligand	AKN, CL, GNP, MG	enzyme	Transferase E.C.2.3.1 BRENDA
Primary reference	Plasticity of aminoglycoside binding to antibiotic kinase APH(2")-Ia., Caldwell SJ, Berghuis AM, Antimicrob Agents Chemother. 2018 Apr 16. pii: AAC.00202-18. doi:, 10.1128/AAC.00202-18. PMID:29661878

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (437 Kb) [Save to disk] Biological Unit Coordinates (6cgd.pdb1.gz) 110 Kb Biological Unit Coordinates (6cgd.pdb2.gz) 109 Kb Biological Unit Coordinates (6cgd.pdb3.gz) 109 Kb Biological Unit Coordinates (6cgd.pdb4.gz) 110 Kb LPC: Ligand-Protein Contacts for 6CGD CSU: Contacts of Structural Units for 6CGD Structure Factors (2320 Kb) Retrieve 6CGD in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 6CGD from S2C, [Save to disk]

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Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [6cgd_B] [6cgd_D] [6cgd_A] [6cgd_C] SWISS-PROT database: Domain organization of by SWISSPFAM

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