FASTA - for database similarity search

On the web (EBI):	open in new windowhttp://www.ebi.ac.uk/fasta33/
With ssh on dapsas:	fasta (or any other program from the fasta package)

open in new windowClick here to see a detailed list of FASTA programs, by choosing the Fasta Help link on the left side of the page.

The following FASTA programs are available (command line) on dapsas:

program	query sequence	database
fasta	protein	protein
fasta	DNA	DNA
fastf	mixed peptides	protein
fasts	linked peptides	protein
fastx/y	DNA	protein
fastm	ordered peptides	protein
tfasts	linked peptides	translated DNA
tfasta	protein	translated DNA
tfastx/y	protein	translated DNA
tfastf	mixed peptides	protein

FASTA servers world wide

open in new windowFasta server at Virginia University

open in new windowFASTA - at GenomeNet

open in new windowFASTA - against the Arabidopsis DB at TAIR

If you find bugs in fasta programs, please send them to Bill Pearson at e-mail: wrp@virginia.edu