• Regulatory Pathways
  • Metabolic Pathways
  • Signaling Pathways
  • Gene Sets Enrichment Analysis
  • Protein Interaction Databases

  • Pathguide contains information about 240 biological pathway resources.

  • WikiPathways public platform dedicated to the curation of biological pathways by and for the scientific community.

    • Regulatory Pathways

  • PathwayExplorer for visualizing high-throughput expression data on biological pathways
  • BioCarta Observe how genes interact in dynamic graphical models.
  • KEGG2
  • KEGGanim - pathway animation tool for high-throughput data
  • SPAD - Signal Transduction

    Metabolic Pathways

  • open in new windowHSLS pathways tools at the Pittsburgh university
  • open in new windowMetaScape a web-based portal designed to provide a comprehensive gene list annotation and analysis resource for experimental biologists. In terms of design features, Metascape combines functional enrichment, interactome analysis, gene annotation
  • open in new windowPlant Reactome Pathways pathway database for several crops and model plant species that uses framework of an eukaryotic cell model
  • open in new windowMetaCyc Metabolic Pathway Database
  • Biochemicals Pathways
    • http://dwb4.unl.edu/chem/chem869p/chem869plinks/www.gwu.edu/~mpb/"> Metabolic Pathways of Biochemistry, the online reference of metabolism
  • open in new windowGRAMENE Plants metabolic pathways
  • open in new windowGRAMENE Plants Biochemistry Pathways
  • open in new windowAraCyc - search Arabidopsis Metabolic pathways at TAIR
  • open in new windowPlant Metabolic Network
  • open in new windowMaize metabolic pathwasys search
  • open in new windowBiochemical Pathways at the EXPASY server

    • Signaling Pathways

  • open in new windowSpike at Tel-Aviv university
  • open in new windowPathway Commons database

  • NetPath resource of signal transduction pathways in humans

    • Gene Sets Enrichment Analysis

  • open in new windowGeneTrail