- open in new windowHomoloGene - a system for automated detection of homologs at NCBI
- open in new windowDOOP - Database of Orthologous Promoters
- open in new windowInparanoid - Eukaryotic Ortholog Groups
- open in new windowHOVERGEN - Homologous Vertebrate Genes Database
- OrthoMCL - Ortholog Grouping for Protein Sequences from Multiple Genomes
- open in new windowOrthologID - identifies orthologous groups for complete genomes
- open in new windowHCOP - HGNC Comparison of Orthology Predictions
- open in new windowYOGY - resource for retrieving orthologous proteins from ten eukaryotic organisms
- open in new windowOrthoDisease - a database of Human Disease Orthologs